Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   B5T_RS17175 Genome accession   NC_018691
Coordinates   3867341..3868564 (+) Length   407 a.a.
NCBI ID   WP_014995801.1    Uniprot ID   -
Organism   Alloalcanivorax dieselolei B5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3862341..3873564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5T_RS17155 (B5T_03469) - 3863041..3864324 (+) 1284 WP_014995797.1 type II toxin-antitoxin system HipA family toxin -
  B5T_RS17160 (B5T_03470) - 3864325..3864597 (+) 273 WP_014995798.1 helix-turn-helix domain-containing protein -
  B5T_RS17165 (B5T_03471) pilE 3864719..3865195 (-) 477 WP_014995799.1 pilin Machinery gene
  B5T_RS17170 (B5T_03472) pilB 3865557..3867269 (+) 1713 WP_014995800.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B5T_RS17175 (B5T_03473) pilC 3867341..3868564 (+) 1224 WP_014995801.1 type II secretion system F family protein Machinery gene
  B5T_RS17180 (B5T_03474) pilD 3868592..3869455 (+) 864 WP_014995802.1 A24 family peptidase Machinery gene
  B5T_RS17185 (B5T_03475) coaE 3869554..3870159 (+) 606 WP_014995803.1 dephospho-CoA kinase -
  B5T_RS17190 (B5T_03476) - 3870149..3870343 (+) 195 WP_014995804.1 DNA gyrase inhibitor YacG -
  B5T_RS17195 (B5T_03477) - 3870344..3871294 (-) 951 WP_014995805.1 Nudix family hydrolase -
  B5T_RS17200 (B5T_03478) argJ 3871297..3872502 (-) 1206 WP_014995806.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43730.54 Da        Isoelectric Point: 9.6623

>NTDB_id=53751 B5T_RS17175 WP_014995801.1 3867341..3868564(+) (pilC) [Alloalcanivorax dieselolei B5]
MAKTAAQQKTATFLYEGLDRKGSKVKGEISGKGPALVRAELRRQGIQARKVIKKRELSLGGKKKIKPADIALFTRQMATM
MKAGVPLVQSFDIVADGLDNPSMKDVVLKIKTEVEGGNNFAGALRQHPMLFDDLYCSLIESGEASGSLETMLDRVALYKE
KSEALKSKIRKAVKYPIAVICIAVIVTGILLVKVVPTFQELFEGFGAELPAFTQFVIGLSEGLQAHFLPILLGGGALIAG
FIQGRKRSQAFKDAVDRLLLRLPIIGDITHKATVARFARTLSTTFAAGVPLIDALDACAGATGNVVYRKAVLQVKEDVAT
GQQLQFAMRSTGVFPPMALQMTAIGEESGALDGMLGKVATYYEDEVDNLVDGLTSMLEPLIMSVLGVLIGGLIIAMYLPI
FQLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=53751 B5T_RS17175 WP_014995801.1 3867341..3868564(+) (pilC) [Alloalcanivorax dieselolei B5]
ATGGCTAAGACAGCGGCGCAGCAGAAAACCGCCACTTTTCTCTACGAAGGCCTTGATCGCAAGGGCAGCAAAGTCAAAGG
GGAAATCAGCGGCAAGGGCCCGGCGCTGGTGCGCGCGGAACTGCGCCGCCAGGGCATTCAGGCACGCAAGGTCATCAAAA
AAAGGGAGCTGTCCCTGGGTGGCAAAAAGAAGATCAAACCCGCCGATATCGCCCTGTTCACCCGCCAGATGGCCACCATG
ATGAAAGCCGGCGTACCCTTGGTGCAATCCTTCGATATCGTTGCCGATGGCCTGGACAATCCATCGATGAAGGACGTCGT
GCTGAAGATCAAGACCGAGGTGGAAGGCGGCAACAACTTCGCCGGAGCCCTGCGACAGCACCCTATGCTGTTCGACGATC
TGTACTGCAGCCTGATCGAATCCGGCGAGGCTTCCGGCTCGCTGGAGACCATGCTGGATCGTGTCGCGCTCTATAAAGAA
AAAAGCGAAGCCTTGAAATCCAAGATCCGCAAGGCGGTGAAATACCCCATTGCCGTCATCTGTATCGCCGTCATCGTCAC
CGGCATCCTGCTGGTAAAAGTGGTGCCGACCTTTCAGGAATTGTTTGAAGGGTTCGGGGCCGAGTTGCCCGCCTTTACCC
AATTCGTTATCGGACTGTCCGAAGGACTGCAGGCTCATTTTCTCCCCATACTGCTCGGTGGTGGCGCACTCATTGCTGGC
TTCATCCAGGGAAGGAAGCGTTCCCAAGCGTTCAAGGACGCCGTCGATCGCTTATTGCTGCGCTTGCCGATTATTGGCGA
CATTACTCACAAAGCCACCGTGGCCCGGTTCGCCCGAACCCTGTCCACCACCTTCGCCGCCGGGGTTCCTCTGATCGACG
CCCTGGACGCCTGTGCCGGCGCCACCGGCAATGTGGTTTATCGCAAGGCGGTACTACAGGTCAAAGAAGACGTGGCCACC
GGCCAGCAGCTACAATTCGCCATGCGCTCCACCGGCGTGTTCCCACCGATGGCTTTGCAGATGACCGCCATCGGCGAGGA
ATCCGGGGCTCTGGACGGTATGCTTGGTAAAGTCGCCACCTACTACGAGGATGAGGTGGATAATCTCGTGGATGGTCTGA
CCAGCATGCTGGAGCCGCTGATCATGTCGGTGCTGGGGGTGCTGATCGGCGGCCTGATCATCGCCATGTATCTGCCGATC
TTCCAACTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.915

98.034

0.646
  pilC Acinetobacter baylyi ADP1

64.925

98.771

0.641
  pilC Acinetobacter baumannii D1279779

64.179

98.771

0.634
  pilC Legionella pneumophila strain ERS1305867

53.149

97.543

0.518
  pilC Vibrio cholerae strain A1552

44.221

97.789

0.432
  pilG Neisseria gonorrhoeae MS11

43.89

98.526

0.432
  pilG Neisseria meningitidis 44/76-A

43.641

98.526

0.43
  pilC Vibrio campbellii strain DS40M4

41.951

100

0.423
  pilC Thermus thermophilus HB27

38.366

99.263

0.381

Multiple sequence alignment