Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   B5T_RS17180 Genome accession   NC_018691
Coordinates   3868592..3869455 (+) Length   287 a.a.
NCBI ID   WP_014995802.1    Uniprot ID   -
Organism   Alloalcanivorax dieselolei B5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3863592..3874455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5T_RS17160 (B5T_03470) - 3864325..3864597 (+) 273 WP_014995798.1 helix-turn-helix domain-containing protein -
  B5T_RS17165 (B5T_03471) pilE 3864719..3865195 (-) 477 WP_014995799.1 pilin Machinery gene
  B5T_RS17170 (B5T_03472) pilB 3865557..3867269 (+) 1713 WP_014995800.1 type IV-A pilus assembly ATPase PilB Machinery gene
  B5T_RS17175 (B5T_03473) pilC 3867341..3868564 (+) 1224 WP_014995801.1 type II secretion system F family protein Machinery gene
  B5T_RS17180 (B5T_03474) pilD 3868592..3869455 (+) 864 WP_014995802.1 A24 family peptidase Machinery gene
  B5T_RS17185 (B5T_03475) coaE 3869554..3870159 (+) 606 WP_014995803.1 dephospho-CoA kinase -
  B5T_RS17190 (B5T_03476) - 3870149..3870343 (+) 195 WP_014995804.1 DNA gyrase inhibitor YacG -
  B5T_RS17195 (B5T_03477) - 3870344..3871294 (-) 951 WP_014995805.1 Nudix family hydrolase -
  B5T_RS17200 (B5T_03478) argJ 3871297..3872502 (-) 1206 WP_014995806.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31467.52 Da        Isoelectric Point: 7.2176

>NTDB_id=53752 B5T_RS17180 WP_014995802.1 3868592..3869455(+) (pilD) [Alloalcanivorax dieselolei B5]
MFSFLADQPALLIIFCTVFGLLVGSFLNVVIHRVPRMMERTWRREAQEVLELPIEETSPYNLVVPRSRCPHCDHAIRWHE
NIPVISWLLLKGRCSACGQGISARYPLIELLSALIAAVCAWQFGYGSWLVFVLFASFTLLALAAIDLDTTLLPDAMTFPL
LWAGLLAALLGISPVSLPDAVVGAMAGYLSLWSLYWVFKLVTGKEGMGYGDFKLLAALGAWLGWQYLPLVILLSSVVGLV
FAIGMMARGGLKKGQGIPFGPYLAIAGWIALLWGDTIVGAYLGLFQF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=53752 B5T_RS17180 WP_014995802.1 3868592..3869455(+) (pilD) [Alloalcanivorax dieselolei B5]
GTGTTTAGCTTTCTCGCCGACCAGCCCGCACTGCTCATTATCTTCTGTACCGTGTTCGGGCTGCTGGTGGGCAGCTTTCT
CAATGTGGTGATTCACCGCGTACCGCGAATGATGGAACGCACCTGGCGGCGTGAAGCCCAGGAAGTGCTGGAACTGCCCA
TCGAGGAAACCAGTCCCTACAACCTGGTAGTACCCCGCTCCCGCTGCCCGCATTGCGATCATGCCATTCGCTGGCATGAA
AACATCCCGGTGATCAGTTGGCTGTTATTGAAAGGACGCTGCAGTGCCTGCGGCCAGGGCATCAGTGCCCGTTATCCACT
GATCGAGCTGCTCAGCGCCCTGATCGCCGCCGTTTGCGCCTGGCAGTTTGGTTATGGGAGCTGGCTGGTGTTCGTGCTGT
TCGCCAGCTTTACCCTGCTGGCATTGGCGGCCATCGATCTGGATACCACGCTGCTCCCTGACGCCATGACCTTCCCGTTG
CTGTGGGCGGGTCTGCTGGCGGCGTTGCTGGGCATCTCACCGGTTTCCCTGCCGGACGCGGTCGTCGGCGCCATGGCCGG
TTATCTGTCGTTGTGGAGCCTGTATTGGGTATTCAAACTGGTCACCGGCAAGGAAGGCATGGGCTACGGTGACTTCAAAC
TGCTCGCCGCTCTGGGTGCTTGGCTGGGCTGGCAGTATCTGCCGCTGGTGATTCTGTTGTCCTCGGTGGTGGGTCTGGTG
TTCGCCATTGGCATGATGGCGCGTGGCGGTCTCAAGAAGGGTCAGGGCATCCCCTTCGGGCCCTATCTGGCCATTGCCGG
CTGGATCGCGCTGTTGTGGGGCGACACCATCGTCGGCGCCTATCTGGGTCTGTTTCAGTTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(135-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.857

97.213

0.582
  pilD Vibrio campbellii strain DS40M4

57.609

96.167

0.554
  pilD Acinetobacter baumannii D1279779

49.648

98.955

0.491
  pilD Acinetobacter nosocomialis M2

49.648

98.955

0.491
  pilD Neisseria gonorrhoeae MS11

51.894

91.986

0.477

Multiple sequence alignment