NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	JQM34_RS00445	Genome accession	NZ_CP069427
Coordinates	107883..108353 (+)	Length	156 a.a.
NCBI ID	WP_000609595.1	Uniprot ID	A0A125YWP2
Organism	Streptococcus oralis strain SF100
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 102883..113353

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQM34_RS00415 (JQM34_00086)	-	103067..103615 (-)	549	WP_000039634.1	NADPH-dependent FMN reductase	-
JQM34_RS00420 (JQM34_00087)	-	103707..104153 (-)	447	WP_200371076.1	MarR family transcriptional regulator	-
JQM34_RS00425 (JQM34_00088)	-	104272..104748 (+)	477	WP_000776858.1	DUF5590 domain-containing protein	-
JQM34_RS00430 (JQM34_00089)	-	104758..105936 (+)	1179	WP_200371077.1	pyridoxal phosphate-dependent aminotransferase	-
JQM34_RS00435 (JQM34_00090)	asnS	106086..107432 (+)	1347	WP_161800909.1	asparagine--tRNA ligase	-
JQM34_RS00440 (JQM34_00091)	rpsF	107581..107871 (+)	291	WP_049505311.1	30S ribosomal protein S6	-
JQM34_RS00445 (JQM34_00092)	ssbA	107883..108353 (+)	471	WP_000609595.1	single-stranded DNA-binding protein SsbA	Machinery gene
JQM34_RS00450 (JQM34_00093)	rpsR	108385..108624 (+)	240	WP_000068664.1	30S ribosomal protein S18	-
JQM34_RS00455 (JQM34_00094)	-	108879..109388 (+)	510	WP_200371079.1	GNAT family N-acetyltransferase	-
JQM34_RS00460 (JQM34_00095)	wecB	109832..110980 (+)	1149	WP_200371081.1	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	-
JQM34_RS00465 (JQM34_00096)	-	110987..111766 (+)	780	WP_200371083.1	hypothetical protein	-
JQM34_RS00470 (JQM34_00097)	-	111909..113219 (+)	1311	WP_200371090.1	glycosyltransferase	-

Sequence

Protein

Download Length: 156 a.a. Molecular weight: 17182.08 Da Isoelectric Point: 5.2065

                                >NTDB_id=534497 JQM34_RS00445 WP_000609595.1 107883..108353(+) (ssbA) [Streptococcus oralis strain SF100]

MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR

SYDNQQGQRVYVTEVVAENFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide

Download Length: 471 bp

                                >NTDB_id=534497 JQM34_RS00445 WP_000609595.1 107883..108353(+) (ssbA) [Streptococcus oralis strain SF100]

ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTACGTTATACCCCATCAAATGTAGCAGTTGC

GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT

GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAGAAAGGCTCTCTTATCGGGATCACAGGCCGTATCCAGACTCGT

AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG

AGTGCGCGAAGGACATTCAGGTGGAGCTTATTCTGCACCAACTGCTGGTCAATCAGCACCTGCAAACCCAGTACCAGACT

TTTCACGTTCTGAAAATCCATTTGGAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A125YWP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	52.841	100	0.596
ssb	Neisseria gonorrhoeae MS11	34.286	100	0.385
ssbB/cilA	Streptococcus pneumoniae TIGR4	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae R6	49.573	75	0.372
ssbB/cilA	Streptococcus mitis SK321	49.573	75	0.372
ssbB/cilA	Streptococcus pneumoniae D39	49.573	75	0.372
ssbB/cilA	Streptococcus mitis NCTC 12261	49.573	75	0.372
ssb	Neisseria meningitidis MC58	33.143	100	0.372
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.717	67.949	0.372

Detailed information NTG0534497