Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KBP30_RS40190 Genome accession   NZ_CP084203
Coordinates   9342554..9343546 (-) Length   330 a.a.
NCBI ID   WP_230922428.1    Uniprot ID   -
Organism   Streptomyces sp. Go40/10 strain Go 40/10     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9337554..9348546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KBP30_RS40175 (KBP30_40220) - 9339847..9340611 (+) 765 WP_230922425.1 hypothetical protein -
  KBP30_RS40180 (KBP30_40225) - 9340865..9341752 (-) 888 WP_230922426.1 neutral zinc metallopeptidase -
  KBP30_RS40185 (KBP30_40230) - 9342206..9342445 (-) 240 WP_230922427.1 hypothetical protein -
  KBP30_RS40190 (KBP30_40235) cytR 9342554..9343546 (-) 993 WP_230922428.1 LacI family DNA-binding transcriptional regulator Regulator
  KBP30_RS40195 (KBP30_40240) - 9343869..9345599 (+) 1731 WP_230922429.1 discoidin domain-containing protein -
  KBP30_RS40200 (KBP30_40245) - 9345704..9347074 (+) 1371 WP_230922430.1 DUF1996 domain-containing protein -
  KBP30_RS40205 (KBP30_40250) - 9347050..9347604 (+) 555 WP_230922431.1 DUF305 domain-containing protein -
  KBP30_RS40210 (KBP30_40255) - 9347675..9348067 (+) 393 WP_230922432.1 hypothetical protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35173.29 Da        Isoelectric Point: 8.4346

>NTDB_id=534497 KBP30_RS40190 WP_230922428.1 9342554..9343546(-) (cytR) [Streptomyces sp. Go40/10 strain Go 40/10]
MKRPTLAVVAARAGVSKSSVSRVINGETTVAPEIRDVVMQAVRELGYVPNAAARNLVTRRTDAVAVVVSDPPKGVVSDDP
LFSTVVRTVSRELEAVGRRVVLMLAESDESRARVERYVAGGHVDGVMLVALHGADPLPAALARMGLPVASFNRTAATDVP
YVALDNAGGAELAVRHLLDRGRRRIATITGPLDLYESRERLEGYRATLRDTGRRSIVALGDFTRASGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRALHQAGRRVPDDVAVVGFDDIEAAAYTTPALTSVRSSMADQATATVRLLLALIKGGPRKPVIM
PNDLVVRESS

Nucleotide


Download         Length: 993 bp        

>NTDB_id=534497 KBP30_RS40190 WP_230922428.1 9342554..9343546(-) (cytR) [Streptomyces sp. Go40/10 strain Go 40/10]
ATGAAACGACCCACGCTCGCGGTGGTCGCCGCCCGGGCCGGCGTGTCCAAGTCGAGCGTCTCCCGGGTCATCAACGGGGA
GACCACCGTCGCGCCGGAGATCCGGGACGTCGTCATGCAGGCGGTGCGGGAACTCGGGTACGTGCCGAACGCCGCCGCCC
GCAACCTGGTCACCCGCCGCACGGACGCCGTGGCCGTGGTCGTCTCCGACCCGCCCAAGGGCGTGGTGTCCGACGACCCG
CTGTTCTCGACCGTGGTGCGCACCGTCAGCCGGGAGTTGGAGGCCGTCGGCAGACGCGTGGTGCTGATGCTCGCCGAGTC
CGACGAGAGCCGGGCCCGGGTGGAGCGCTACGTGGCGGGGGGCCACGTGGACGGCGTGATGCTCGTGGCACTGCACGGCG
CCGATCCCCTGCCGGCCGCGCTCGCCCGCATGGGCCTGCCCGTCGCATCCTTCAACCGCACCGCCGCGACGGATGTCCCG
TACGTGGCGCTGGACAACGCGGGCGGCGCGGAGCTGGCCGTACGGCACCTGCTCGACCGGGGCAGACGCCGCATCGCCAC
GATCACCGGGCCGCTGGACCTGTACGAGTCCCGTGAGCGGCTGGAGGGGTACCGGGCGACCCTGCGGGACACCGGGCGCC
GCTCGATCGTCGCGCTGGGCGACTTCACCCGGGCGTCGGGCGCGGAGGCCATGCGGCAGCTGCTCGAAGACGACCCGGAC
CTCGACGCGGTGTTCGCGGCCAACGATCTCATGGCCATCGGGGCGTTGCGCGCCCTGCACCAGGCGGGCCGCCGGGTGCC
CGACGACGTGGCCGTCGTCGGGTTCGACGACATCGAGGCCGCCGCCTACACCACGCCCGCGCTCACCTCGGTGCGCAGTT
CCATGGCCGACCAGGCCACCGCGACGGTGCGTCTGCTGCTGGCGCTCATCAAGGGCGGCCCGAGGAAGCCGGTGATCATG
CCGAACGATCTCGTGGTCCGCGAGTCGAGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

34.593

100

0.361