Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LB316_RS01905 Genome accession   NZ_CP084107
Coordinates   397039..397884 (+) Length   281 a.a.
NCBI ID   WP_014363379.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC49/ST49-MSSA     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 392039..402884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB316_RS01890 (LB316_01890) - 392305..394146 (-) 1842 WP_000077330.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  LB316_RS01895 (LB316_01895) metC 394115..395275 (-) 1161 WP_000175864.1 cystathionine beta-lyase MetC -
  LB316_RS01900 (LB316_01900) - 395272..396375 (-) 1104 WP_000655692.1 PLP-dependent transferase -
  LB316_RS01905 (LB316_01905) spo0J 397039..397884 (+) 846 WP_014363379.1 ParB/RepB/Spo0J family partition protein Regulator
  LB316_RS01910 (LB316_01910) - 398038..398919 (+) 882 WP_000373075.1 mechanosensitive ion channel family protein -
  LB316_RS01915 (LB316_01915) - 398949..399152 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  LB316_RS01920 (LB316_01920) ychF 399164..400261 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  LB316_RS01925 (LB316_01925) - 400347..400538 (-) 192 WP_001052483.1 hypothetical protein -
  LB316_RS01930 (LB316_01930) rpsF 400782..401078 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  LB316_RS01935 (LB316_01935) ssb 401099..401602 (+) 504 WP_000934799.1 single-stranded DNA-binding protein -
  LB316_RS01940 (LB316_01940) rpsR 401654..401896 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32798.76 Da        Isoelectric Point: 9.8609

>NTDB_id=534240 LB316_RS01905 WP_014363379.1 397039..397884(+) (spo0J) [Staphylococcus aureus strain CC49/ST49-MSSA]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SEIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=534240 LB316_RS01905 WP_014363379.1 397039..397884(+) (spo0J) [Staphylococcus aureus strain CC49/ST49-MSSA]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGGAAATTGCTGGTTTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATAGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAATCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(22-109)

HTH domain found in ParB protein (HTH_ParB)

(161-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.613

92.883

0.377