Detailed information NTG0534245

Bioinformatically predicted

Overview

• Name: comGF
• Type: Machinery gene
• Locus tag: JQ490_RS11055
• Genome accession: NZ_CP069378
• Coordinates: 2236487..2236933 (+)
• Length: 148 a.a.
• NCBI ID: WP_031296844.1
• Uniprot ID: A0AAC9R3D6
• Organism: Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2231487..2241933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JQ490_RS11030 (JQ490_11030)	comGA	2233563..2234501 (+)	939	WP_010906320.1	competence type IV pilus ATPase ComGA	Machinery gene
JQ490_RS11035 (JQ490_11035)	comGB	2234395..2235468 (+)	1074	WP_010906319.1	competence type IV pilus assembly protein ComGB	Machinery gene
JQ490_RS11040 (JQ490_11040)	comGC	2235596..2235865 (+)	270	WP_023349160.1	competence type IV pilus major pilin ComGC	Machinery gene
JQ490_RS11045 (JQ490_11045)	comGD	2235840..2236256 (+)	417	WP_021216554.1	competence type IV pilus minor pilin ComGD	Machinery gene
JQ490_RS11050 (JQ490_11050)	comGE	2236228..2236524 (+)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
JQ490_RS11055 (JQ490_11055)	comGF	2236487..2236933 (+)	447	WP_031296844.1	competence type IV pilus minor pilin ComGF	Machinery gene
JQ490_RS11060 (JQ490_11060)	comGG	2236972..2237256 (+)	285	WP_010906314.1	competence type IV pilus minor pilin ComGG	Machinery gene
JQ490_RS11065 (JQ490_11065)	-	2237337..2237774 (+)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
JQ490_RS11070 (JQ490_11070)	-	2237771..2238613 (+)	843	WP_010906312.1	metal ABC transporter substrate-binding protein	-
JQ490_RS11075 (JQ490_11075)	-	2238790..2239527 (+)	738	WP_010906311.1	metal ABC transporter ATP-binding protein	-
JQ490_RS11080 (JQ490_11080)	-	2239520..2240329 (+)	810	WP_010906310.1	metal ABC transporter permease	-
JQ490_RS11085 (JQ490_11085)	-	2240368..2241234 (-)	867	WP_010906309.1	RluA family pseudouridine synthase	-
JQ490_RS11090 (JQ490_11090)	-	2241439..2241816 (+)	378	WP_003129983.1	pyridoxamine 5'-phosphate oxidase family protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 17083.85 Da
• Isoelectric Point: 8.6780

>NTDB_id=534245 JQ490_RS11055 WP_031296844.1 2236487..2236933(+) (comGF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
MERKLCDLNFKVKAFTLLECLVALLAISGSALVISGLTKMLKEQVAISQSDSIKDWQIFCQQMRFELSGTKLDRVEQNFL
YVTKDKKLRFGFMSDDFRKTDDKGQGYQPMLYDIKAAKIQATKNLITIRIDFNQGGERTFIYQFPEDT

Nucleotide

• Length: 447 bp

>NTDB_id=534245 JQ490_RS11055 WP_031296844.1 2236487..2236933(+) (comGF) [Lactococcus lactis subsp. lactis bv. diacetylactis strain Ge001]
ATGGAAAGGAAATTATGCGACTTGAACTTCAAAGTTAAAGCATTTACCTTGTTGGAGTGTTTGGTGGCACTTCTTGCAAT
TTCTGGTTCAGCCCTTGTCATCTCAGGTTTAACAAAGATGTTGAAAGAACAAGTGGCGATTAGTCAAAGTGATAGCATAA
AAGATTGGCAAATTTTCTGTCAGCAAATGCGTTTTGAACTCTCAGGAACAAAATTAGATAGGGTAGAACAGAATTTTCTG
TATGTAACTAAAGATAAAAAACTAAGGTTTGGTTTTATGAGTGATGATTTCCGGAAGACTGATGACAAAGGTCAGGGTTA
TCAGCCAATGCTTTATGATATAAAAGCGGCTAAGATTCAAGCTACTAAAAATTTAATAACCATAAGAATTGATTTTAATC
AAGGAGGTGAAAGAACATTTATTTATCAATTTCCAGAAGATACGTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (48-137)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGF	Lactococcus lactis subsp. cremoris KW2	75.54	93.919	0.709
comYF	Streptococcus mutans UA140	47.518	95.27	0.453
comYF	Streptococcus mutans UA159	46.809	95.27	0.446
comGF/cglF	Streptococcus mitis SK321	43.066	92.568	0.399
comGF/cglF	Streptococcus pneumoniae Rx1	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae D39	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae R6	40.426	95.27	0.385
comGF/cglF	Streptococcus pneumoniae TIGR4	40.426	95.27	0.385
comGF/cglF	Streptococcus mitis NCTC 12261	41.606	92.568	0.385