Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C248_RS07915 Genome accession   NC_018608
Coordinates   1625642..1625944 (-) Length   100 a.a.
NCBI ID   WP_029657948.1    Uniprot ID   -
Organism   Staphylococcus aureus 08BA02176     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1620642..1630944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C248_RS07880 (C248_1578) gcvPA 1621144..1622490 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  C248_RS07885 (C248_1579) gcvT 1622510..1623601 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  C248_RS07890 (C248_1580) - 1623760..1624284 (-) 525 WP_001015120.1 shikimate kinase -
  C248_RS07895 (C248_1581) - 1624274..1624420 (-) 147 WP_001789879.1 hypothetical protein -
  C248_RS07900 (C248_1582) comGF 1624517..1625014 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  C248_RS07905 (C248_1583) comGE 1624932..1625231 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  C248_RS07910 (C248_1584) comGD 1625218..1625664 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  C248_RS07915 (C248_1585) comGC 1625642..1625944 (-) 303 WP_029657948.1 competence type IV pilus major pilin ComGC Machinery gene
  C248_RS07920 (C248_1586) comGB 1625966..1627036 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  C248_RS07925 (C248_1587) comGA 1627008..1627982 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  C248_RS07930 (C248_1588) - 1628034..1628657 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  C248_RS07935 (C248_1589) - 1628654..1628983 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  C248_RS07940 (C248_1590) - 1628983..1629969 (-) 987 WP_000161315.1 ROK family glucokinase -
  C248_RS07945 (C248_1591) - 1629966..1630169 (-) 204 WP_000087559.1 YqgQ family protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 10866.75 Da        Isoelectric Point: 7.8607

>NTDB_id=53209 C248_RS07915 WP_029657948.1 1625642..1625944(-) (comGC) [Staphylococcus aureus 08BA02176]
MSKKTQAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFIKEA
QKTCKSGETITISNGEAVAN

Nucleotide


Download         Length: 303 bp        

>NTDB_id=53209 C248_RS07915 WP_029657948.1 1625642..1625944(-) (comGC) [Staphylococcus aureus 08BA02176]
ATTTCTAAAAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTATTATTAATCATCAGTTTATTATTAATTTTAAT
CATTCCAAATATTGCTAAACAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTAATAGTCAAA
TTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATAAAAGAAGCA
CAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

100

98

0.98
  comGC Staphylococcus aureus MW2

100

98

0.98
  comGC/cglC Streptococcus mitis SK321

46.809

94

0.44
  comGC/cglC Streptococcus pneumoniae R6

45.745

94

0.43
  comGC/cglC Streptococcus pneumoniae D39

45.745

94

0.43
  comGC/cglC Streptococcus pneumoniae TIGR4

45.745

94

0.43
  comGC/cglC Streptococcus pneumoniae Rx1

45.745

94

0.43
  comYC Streptococcus gordonii str. Challis substr. CH1

42.857

98

0.42
  comGC/cglC Streptococcus mitis NCTC 12261

51.282

78

0.4
  comYC Streptococcus suis isolate S10

50

78

0.39
  comGC Bacillus subtilis subsp. subtilis str. 168

41.758

91

0.38
  comGC Lactococcus lactis subsp. cremoris KW2

46.341

82

0.38
  comYC Streptococcus mutans UA140

48.684

76

0.37
  comYC Streptococcus mutans UA159

48.684

76

0.37

Multiple sequence alignment