Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JM955_RS10600 Genome accession   NZ_CP068717
Coordinates   2084537..2084872 (+) Length   111 a.a.
NCBI ID   WP_063547138.1    Uniprot ID   -
Organism   Bacillus cereus strain CH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2079537..2089872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM955_RS10575 - 2079732..2080559 (-) 828 WP_000499697.1 hypothetical protein -
  JM955_RS10580 - 2080669..2081316 (+) 648 WP_000165961.1 HD domain-containing protein -
  JM955_RS10585 - 2081313..2083208 (+) 1896 WP_000783191.1 ABC-F family ATP-binding cassette domain-containing protein -
  JM955_RS10590 - 2083284..2084015 (+) 732 WP_023521797.1 Bax inhibitor-1/YccA family protein -
  JM955_RS10595 - 2084121..2084375 (+) 255 WP_053564643.1 DUF4318 domain-containing protein -
  JM955_RS10600 ssbA 2084537..2084872 (+) 336 WP_063547138.1 single-stranded DNA-binding protein Machinery gene
  JM955_RS10605 - 2085145..2085474 (-) 330 WP_000566293.1 hypothetical protein -
  JM955_RS31075 - 2085614..2085688 (+) 75 Protein_2026 transposase -
  JM955_RS10610 - 2085971..2087098 (+) 1128 WP_063547139.1 conserved virulence factor C family protein -
  JM955_RS10615 - 2087102..2087485 (+) 384 WP_000634891.1 thiol-disulfide oxidoreductase DCC family protein -
  JM955_RS10620 - 2087569..2088003 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  JM955_RS10625 - 2088053..2088829 (+) 777 WP_063547140.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12799.67 Da        Isoelectric Point: 9.4344

>NTDB_id=530642 JM955_RS10600 WP_063547138.1 2084537..2084872(+) (ssbA) [Bacillus cereus strain CH]
MMNRVVLIGRLTKEPELYYTKQGVAYARICIAVNRGFRNSLGEQQVDFINCVIWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=530642 JM955_RS10600 WP_063547138.1 2084537..2084872(+) (ssbA) [Bacillus cereus strain CH]
ATGATGAATAGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTGATAT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAAGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396