Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | JHS79_RS14425 | Genome accession | NZ_CP068641 |
| Coordinates | 2902521..2902940 (+) | Length | 139 a.a. |
| NCBI ID | WP_025442238.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain VP157 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2897521..2907940
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JHS79_RS14410 (JHS79_14245) | pdhR | 2899552..2900319 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| JHS79_RS14415 (JHS79_14250) | ampD | 2900725..2901276 (-) | 552 | WP_140126227.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| JHS79_RS14420 (JHS79_14255) | nadC | 2901369..2902256 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| JHS79_RS14425 (JHS79_14260) | pilA | 2902521..2902940 (+) | 420 | WP_025442238.1 | pilin | Machinery gene |
| JHS79_RS14430 (JHS79_14265) | pilB | 2902946..2904631 (+) | 1686 | WP_140126226.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| JHS79_RS14435 (JHS79_14270) | pilC | 2904655..2905878 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| JHS79_RS14440 (JHS79_14275) | pilD | 2905943..2906812 (+) | 870 | WP_005493974.1 | prepilin peptidase | Machinery gene |
| JHS79_RS14445 (JHS79_14280) | coaE | 2906813..2907427 (+) | 615 | WP_025633754.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14239.23 Da Isoelectric Point: 4.9630
>NTDB_id=530164 JHS79_RS14425 WP_025442238.1 2902521..2902940(+) (pilA) [Vibrio parahaemolyticus strain VP157]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=530164 JHS79_RS14425 WP_025442238.1 2902521..2902940(+) (pilA) [Vibrio parahaemolyticus strain VP157]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
70.29 |
99.281 |
0.698 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42.143 |
100 |
0.424 |
| pilA | Acinetobacter baumannii strain A118 |
41.86 |
92.806 |
0.388 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae C6706 |
39.259 |
97.122 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
43.089 |
88.489 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.276 |
88.489 |
0.374 |