Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6J09_RS01710 Genome accession   NZ_CP068216
Coordinates   384023..384289 (-) Length   88 a.a.
NCBI ID   WP_046466868.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379023..389289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS01685 (I6J09_01680) gcvPA 379593..380942 (-) 1350 WP_208969929.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I6J09_RS01690 (I6J09_01685) gcvT 380961..382052 (-) 1092 WP_208969930.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J09_RS01695 (I6J09_01690) - 382224..382742 (-) 519 WP_208969931.1 shikimate kinase -
  I6J09_RS01700 (I6J09_01695) - 383316..383549 (-) 234 WP_154894584.1 hypothetical protein -
  I6J09_RS01705 (I6J09_01700) comGD 383596..384045 (-) 450 WP_177244131.1 competence type IV pilus minor pilin ComGD -
  I6J09_RS01710 (I6J09_01705) comGC 384023..384289 (-) 267 WP_046466868.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J09_RS01715 (I6J09_01710) comGB 384358..385425 (-) 1068 WP_208969932.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J09_RS01720 (I6J09_01715) comGA 385397..386371 (-) 975 WP_070453859.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J09_RS01725 (I6J09_01720) - 386418..387041 (-) 624 WP_208969933.1 MBL fold metallo-hydrolase -
  I6J09_RS01730 (I6J09_01725) - 387045..387368 (-) 324 WP_017636254.1 MTH1187 family thiamine-binding protein -
  I6J09_RS01735 (I6J09_01730) - 387368..388354 (-) 987 WP_017636255.1 ROK family glucokinase -
  I6J09_RS01740 (I6J09_01735) - 388351..388554 (-) 204 WP_017636256.1 YqgQ family protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9672.25 Da        Isoelectric Point: 7.1319

>NTDB_id=528130 I6J09_RS01710 WP_046466868.1 384023..384289(-) (comGC) [Staphylococcus pasteuri strain FDAARGOS_1152]
MLLVLLIISLLLILIIPNIAKQTAHIQTTGCDAQVKMVNSQIEAYTLKHNRNPNTIQDLISEGFIKENQKNCKSGETISI
NNGEAVAN

Nucleotide


Download         Length: 267 bp        

>NTDB_id=528130 I6J09_RS01710 WP_046466868.1 384023..384289(-) (comGC) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGTTACTAGTTTTATTAATAATTAGCTTATTGCTTATTCTAATTATTCCCAATATAGCTAAACAAACCGCTCATATACA
AACTACTGGTTGTGACGCTCAAGTGAAAATGGTTAATAGTCAAATTGAAGCATATACTTTAAAACACAATAGAAATCCTA
ATACCATCCAAGATTTAATTTCTGAAGGATTTATTAAAGAAAACCAAAAAAATTGCAAATCAGGAGAAACTATTAGTATT
AATAATGGCGAAGCGGTTGCAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

83.333

81.818

0.682
  comGC Staphylococcus aureus N315

83.333

81.818

0.682
  comYC Streptococcus gordonii str. Challis substr. CH1

42.222

100

0.432
  comGC/cglC Streptococcus pneumoniae TIGR4

40

96.591

0.386
  comGC/cglC Streptococcus pneumoniae Rx1

40

96.591

0.386
  comGC/cglC Streptococcus pneumoniae D39

40

96.591

0.386
  comGC/cglC Streptococcus pneumoniae R6

40

96.591

0.386
  comYC Streptococcus suis isolate S10

49.275

78.409

0.386
  comGC/cglC Streptococcus mitis NCTC 12261

38.636

100

0.386
  comYC Streptococcus mutans UA140

44.444

81.818

0.364
  comYC Streptococcus mutans UA159

44.444

81.818

0.364