Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   I6J09_RS01715 Genome accession   NZ_CP068216
Coordinates   384358..385425 (-) Length   355 a.a.
NCBI ID   WP_208969932.1    Uniprot ID   -
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379358..390425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS01685 (I6J09_01680) gcvPA 379593..380942 (-) 1350 WP_208969929.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I6J09_RS01690 (I6J09_01685) gcvT 380961..382052 (-) 1092 WP_208969930.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J09_RS01695 (I6J09_01690) - 382224..382742 (-) 519 WP_208969931.1 shikimate kinase -
  I6J09_RS01700 (I6J09_01695) - 383316..383549 (-) 234 WP_154894584.1 hypothetical protein -
  I6J09_RS01705 (I6J09_01700) comGD 383596..384045 (-) 450 WP_177244131.1 competence type IV pilus minor pilin ComGD -
  I6J09_RS01710 (I6J09_01705) comGC 384023..384289 (-) 267 WP_046466868.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J09_RS01715 (I6J09_01710) comGB 384358..385425 (-) 1068 WP_208969932.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J09_RS01720 (I6J09_01715) comGA 385397..386371 (-) 975 WP_070453859.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J09_RS01725 (I6J09_01720) - 386418..387041 (-) 624 WP_208969933.1 MBL fold metallo-hydrolase -
  I6J09_RS01730 (I6J09_01725) - 387045..387368 (-) 324 WP_017636254.1 MTH1187 family thiamine-binding protein -
  I6J09_RS01735 (I6J09_01730) - 387368..388354 (-) 987 WP_017636255.1 ROK family glucokinase -
  I6J09_RS01740 (I6J09_01735) - 388351..388554 (-) 204 WP_017636256.1 YqgQ family protein -
  I6J09_RS01745 (I6J09_01740) - 388544..389998 (-) 1455 WP_208969934.1 rhomboid family protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42056.86 Da        Isoelectric Point: 9.3128

>NTDB_id=528131 I6J09_RS01715 WP_208969932.1 384358..385425(-) (comGB) [Staphylococcus pasteuri strain FDAARGOS_1152]
MKLLLINIFKFRQAKCLTKSEQLDLVYRLHQLLKHGFTLYESFKFLNLHFKYRGDKSHDEVLNKIEQGATCWEVFKYLDY
SSDIVTQTYLAERFGNLELSLLEATRYLKKQIQVTQNVLKTIQYPIVLIITFILILTLLNFTVIPQIKELYQSMNIELSP
LQSILSYFITTFPLFIIILSSVICILSIIFKYRFNKMTIENQIQLMCHIPIIKHYYKILKTYQLSNELAHFYRNGVNLQI
IVRIYKQSENNQFHQFLGDRLLNQSYQGENLPDILKKLNCYENDLIKFIEQGEKSGKLDIELTLYSQILIQQFEAMAKRH
IKFIQPVIFLILGLFIVALYLTIMLPIFDMLQSIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=528131 I6J09_RS01715 WP_208969932.1 384358..385425(-) (comGB) [Staphylococcus pasteuri strain FDAARGOS_1152]
GTGAAACTATTGCTGATAAATATATTTAAATTCAGACAAGCCAAATGCCTAACTAAATCTGAACAATTAGATTTAGTGTA
TAGATTACATCAATTACTTAAACATGGATTTACTCTTTACGAATCATTTAAATTTTTAAATCTACATTTTAAATATAGAG
GAGATAAATCACATGATGAAGTGTTAAATAAAATAGAACAAGGTGCAACTTGCTGGGAAGTATTTAAATACTTAGATTAT
TCAAGTGACATTGTTACACAAACATATTTAGCTGAAAGATTTGGAAATTTAGAACTTTCTCTATTAGAAGCTACAAGATA
TTTAAAAAAGCAAATACAAGTTACTCAAAATGTTTTAAAGACGATACAGTATCCTATTGTATTAATAATTACTTTTATAT
TAATATTAACGTTACTCAATTTTACAGTTATACCTCAAATTAAAGAATTATACCAATCTATGAATATAGAACTTTCTCCA
TTACAATCTATTCTTTCTTATTTTATTACAACTTTCCCTTTATTCATCATAATTTTATCCAGTGTAATATGTATATTATC
TATCATATTTAAATATCGTTTTAATAAGATGACTATAGAAAATCAAATTCAATTAATGTGTCACATTCCAATTATTAAAC
ATTATTATAAAATTTTAAAAACGTATCAATTATCAAATGAGTTAGCCCATTTTTATAGAAATGGAGTTAATTTACAGATA
ATCGTTAGAATTTATAAACAATCAGAGAATAATCAATTTCATCAATTTTTAGGAGACAGGTTACTCAACCAATCTTATCA
AGGAGAAAATCTACCTGATATATTAAAAAAATTAAATTGCTATGAAAATGACTTGATTAAATTTATAGAACAAGGAGAAA
AAAGTGGAAAACTTGATATCGAATTAACGCTATATAGTCAGATACTTATACAACAATTCGAAGCTATGGCTAAAAGACAC
ATTAAATTCATTCAACCAGTTATCTTTTTAATATTAGGATTATTTATCGTTGCACTTTATTTAACTATTATGCTACCTAT
ATTTGACATGTTGCAGTCAATTAAATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(226-346)

Type II secretion system (T2SS), protein F (T2SSF)

(29-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.315

100

0.485
  comGB Staphylococcus aureus N315

48.315

100

0.485