Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   I6J09_RS01720 Genome accession   NZ_CP068216
Coordinates   385397..386371 (-) Length   324 a.a.
NCBI ID   WP_070453859.1    Uniprot ID   A0A654AWN8
Organism   Staphylococcus pasteuri strain FDAARGOS_1152     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 380397..391371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J09_RS01690 (I6J09_01685) gcvT 380961..382052 (-) 1092 WP_208969930.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J09_RS01695 (I6J09_01690) - 382224..382742 (-) 519 WP_208969931.1 shikimate kinase -
  I6J09_RS01700 (I6J09_01695) - 383316..383549 (-) 234 WP_154894584.1 hypothetical protein -
  I6J09_RS01705 (I6J09_01700) comGD 383596..384045 (-) 450 WP_177244131.1 competence type IV pilus minor pilin ComGD -
  I6J09_RS01710 (I6J09_01705) comGC 384023..384289 (-) 267 WP_046466868.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J09_RS01715 (I6J09_01710) comGB 384358..385425 (-) 1068 WP_208969932.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J09_RS01720 (I6J09_01715) comGA 385397..386371 (-) 975 WP_070453859.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J09_RS01725 (I6J09_01720) - 386418..387041 (-) 624 WP_208969933.1 MBL fold metallo-hydrolase -
  I6J09_RS01730 (I6J09_01725) - 387045..387368 (-) 324 WP_017636254.1 MTH1187 family thiamine-binding protein -
  I6J09_RS01735 (I6J09_01730) - 387368..388354 (-) 987 WP_017636255.1 ROK family glucokinase -
  I6J09_RS01740 (I6J09_01735) - 388351..388554 (-) 204 WP_017636256.1 YqgQ family protein -
  I6J09_RS01745 (I6J09_01740) - 388544..389998 (-) 1455 WP_208969934.1 rhomboid family protein -
  I6J09_RS01750 (I6J09_01745) - 389995..390549 (-) 555 WP_029055745.1 5-formyltetrahydrofolate cyclo-ligase -
  I6J09_RS01755 (I6J09_01750) rpmG 390788..390937 (-) 150 WP_017636259.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37225.45 Da        Isoelectric Point: 9.1458

>NTDB_id=528132 I6J09_RS01720 WP_070453859.1 385397..386371(-) (comGA) [Staphylococcus pasteuri strain FDAARGOS_1152]
MKILFQEIINKGIAYKASDIHFIPMEHYVHIKFRVNDTLTPYETLDINIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGCESCVIRIVPQYFQSKKETYEFKDFKHFMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNNKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCRGAL
LRLLEMGVTVQELSQAINLISNQRLITTSHNHRQLVCELMFKNQINYFFEHNQTMPKSFKRLASKLDDMTKEGIICETIA
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=528132 I6J09_RS01720 WP_070453859.1 385397..386371(-) (comGA) [Staphylococcus pasteuri strain FDAARGOS_1152]
ATGAAGATTCTATTTCAAGAAATAATTAATAAAGGAATTGCATATAAAGCGAGTGATATACACTTTATTCCTATGGAGCA
TTATGTTCATATTAAATTTAGAGTAAATGATACATTAACACCTTATGAAACACTTGATATTAATATATATCGTAAGTTAT
TGGTGTTTATGAAATTCCAAGCTGGTTTAGATGTTTCTACACAACAAATCGCTCAAAGTGGCCGCTATACATATAAATTA
AGGTCAGTTTATTACTTACGTATTTCAACCCTTCCTTTATCAATTGGATGTGAAAGTTGTGTTATAAGAATTGTGCCTCA
ATATTTTCAAAGTAAAAAGGAAACATACGAGTTTAAAGATTTTAAACATTTTATGAATAAGAAGCAAGGTTTATTGCTTT
TTACTGGTCCTACAGGTTCAGGTAAGAGTACATTAATGTATCAAATGGTTATGTATGCACAAAAAGAGTTAAACCTAAAT
GTTATTTCTATTGAAGATCCAGTTGAACAAATTTTAAAAGGTATTACTCAAATTTCTGTTAATAACAAAGCAGGTATTAC
TTACGCTAGTTCATTTAAAGCAATTTTAAGATGTGATCCAGACGTTATTTTAATCGGAGAAATTCGTGATGCCGAAATCG
CTAAATATGTCTTTCAAGCTAGTCTAAGTGGTCATTTGGTATTAAGTACATTACACGCCAATGATTGTAGAGGGGCTTTA
CTTAGATTATTAGAAATGGGAGTAACAGTTCAAGAATTATCTCAAGCTATAAATTTAATTTCCAATCAACGATTAATTAC
AACATCACATAATCATAGACAATTAGTGTGTGAACTAATGTTTAAAAATCAAATTAATTACTTTTTTGAACATAACCAAA
CGATGCCAAAATCTTTTAAACGATTAGCATCAAAATTAGATGATATGACAAAAGAAGGTATTATATGTGAAACTATTGCT
GATAAATATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A654AWN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

72.531

100

0.725
  comGA Staphylococcus aureus N315

72.531

100

0.725