Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6I41_RS10245 Genome accession   NZ_CP068135
Coordinates   2061595..2061930 (-) Length   111 a.a.
NCBI ID   WP_000982019.1    Uniprot ID   A0A9X5UY69
Organism   Bacillus cereus strain FDAARGOS_1084     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2056595..2066930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6I41_RS10220 (I6I41_10220) - 2057420..2058196 (-) 777 WP_000637459.1 class I SAM-dependent methyltransferase -
  I6I41_RS10225 (I6I41_10225) - 2058246..2058680 (-) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  I6I41_RS10230 (I6I41_10230) - 2058764..2059147 (-) 384 WP_000634884.1 thiol-disulfide oxidoreductase DCC family protein -
  I6I41_RS10235 (I6I41_10235) - 2059151..2060278 (-) 1128 WP_000692566.1 virulence factor -
  I6I41_RS10240 (I6I41_10240) - 2060697..2061257 (+) 561 WP_000714950.1 AAA family ATPase -
  I6I41_RS10245 (I6I41_10245) ssbA 2061595..2061930 (-) 336 WP_000982019.1 single-stranded DNA-binding protein Machinery gene
  I6I41_RS10250 (I6I41_10250) - 2062092..2062346 (-) 255 WP_000975137.1 DUF4318 domain-containing protein -
  I6I41_RS10255 (I6I41_10255) - 2062452..2063183 (-) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  I6I41_RS10260 (I6I41_10260) - 2063259..2065154 (-) 1896 WP_000783191.1 ABC-F family ATP-binding cassette domain-containing protein -
  I6I41_RS10265 (I6I41_10265) - 2065151..2065798 (-) 648 WP_048536256.1 HD domain-containing protein -
  I6I41_RS10270 (I6I41_10270) - 2065908..2066735 (+) 828 WP_070757438.1 hypothetical protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12770.63 Da        Isoelectric Point: 9.7036

>NTDB_id=527384 I6I41_RS10245 WP_000982019.1 2061595..2061930(-) (ssbA) [Bacillus cereus strain FDAARGOS_1084]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDNEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=527384 I6I41_RS10245 WP_000982019.1 2061595..2061930(-) (ssbA) [Bacillus cereus strain FDAARGOS_1084]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAACTGAATATTGTAAAAAGGGATCACTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACGATAATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbA Streptococcus mutans UA159

40

99.099

0.396
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae R6

39.091

99.099

0.387
  ssbB/cilA Streptococcus mitis SK321

39.091

99.099

0.387
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

99.099

0.387