Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K6976_RS00405 Genome accession   NZ_CP082202
Coordinates   70061..71242 (+) Length   393 a.a.
NCBI ID   WP_222759599.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 65061..76242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS00390 (K6976_00390) hexB 66268..68205 (+) 1938 WP_222759597.1 DNA mismatch repair endonuclease MutL Machinery gene
  K6976_RS00395 (K6976_00395) ruvA 68235..68825 (+) 591 WP_044677093.1 Holliday junction branch migration protein RuvA Machinery gene
  K6976_RS00400 (K6976_00400) - 69455..70024 (+) 570 WP_170241530.1 DNA-3-methyladenine glycosylase I -
  K6976_RS00405 (K6976_00405) cinA 70061..71242 (+) 1182 WP_222759599.1 competence/damage-inducible protein A Machinery gene
  K6976_RS00410 (K6976_00410) recA 71294..72445 (+) 1152 WP_024385069.1 recombinase RecA Machinery gene
  K6976_RS00415 (K6976_00415) spx 72681..73079 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  K6976_RS00420 (K6976_00420) - 73179..73445 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  K6976_RS00425 (K6976_00425) ruvX 73445..73864 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  K6976_RS00430 (K6976_00430) - 73876..74196 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  K6976_RS00435 (K6976_00435) - 74367..74945 (+) 579 WP_105179976.1 nucleotidyltransferase family protein -
  K6976_RS00440 (K6976_00440) rpsJ 75607..75915 (+) 309 WP_002939332.1 30S ribosomal protein S10 -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42914.77 Da        Isoelectric Point: 4.3708

>NTDB_id=527008 K6976_RS00405 WP_222759599.1 70061..71242(+) (cinA) [Streptococcus suis strain SS389]
MKAELIAVGTEILTGQIINTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGRLSEEA
DCIRQELQADLGLAVSVLIKPESTEDNVLAKVYLTLATPSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=527008 K6976_RS00405 WP_222759599.1 70061..71242(+) (cinA) [Streptococcus suis strain SS389]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCATTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
CTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGCATTGG
TGAAAGCCAGTTAGTGACTGTTTTGGCGGACTTAATCGACAAGCAGACAGATCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTGCGTTTGAATCAGTTGGAAGAGGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGGCAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGGAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCAGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAACCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATATCTCACTTTGGCTACGCCCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

97.201

100

0.972
  cinA Streptococcus mitis SK321

56.25

100

0.595
  cinA Streptococcus pneumoniae TIGR4

56.25

100

0.595
  cinA Streptococcus pneumoniae R36A

56.25

100

0.595
  cinA Streptococcus pneumoniae Rx1

56.25

100

0.595
  cinA Streptococcus pneumoniae R6

56.25

100

0.595
  cinA Streptococcus mutans UA159

56.934

100

0.595
  cinA Streptococcus pneumoniae D39

56.01

100

0.593
  cinA Streptococcus mitis NCTC 12261

56.01

100

0.593
  cinA Bacillus subtilis subsp. subtilis str. 168

42.175

95.929

0.405