Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I6J02_RS20335 Genome accession   NZ_CP068083
Coordinates   4836313..4837254 (+) Length   313 a.a.
NCBI ID   WP_201679585.1    Uniprot ID   -
Organism   Sphingobacterium spiritivorum strain FDAARGOS_1145     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4831313..4842254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J02_RS20315 (I6J02_20315) - 4831941..4833080 (+) 1140 WP_201679581.1 cytochrome-c peroxidase -
  I6J02_RS20320 (I6J02_20320) - 4833152..4833661 (+) 510 WP_201679582.1 RNA polymerase sigma factor -
  I6J02_RS20325 (I6J02_20325) - 4833940..4835133 (+) 1194 WP_201679583.1 alpha/beta hydrolase -
  I6J02_RS20330 (I6J02_20330) - 4835168..4836223 (+) 1056 WP_201679584.1 YncE family protein -
  I6J02_RS20335 (I6J02_20335) ceuB 4836313..4837254 (+) 942 WP_201679585.1 ABC transporter permease Machinery gene
  I6J02_RS20340 (I6J02_20340) - 4837251..4838201 (+) 951 WP_201679586.1 iron chelate uptake ABC transporter family permease subunit -
  I6J02_RS20345 (I6J02_20345) - 4838198..4838959 (+) 762 WP_201679587.1 ABC transporter ATP-binding protein -
  I6J02_RS20350 (I6J02_20350) - 4839008..4839940 (+) 933 WP_201679588.1 siderophore ABC transporter substrate-binding protein -
  I6J02_RS20355 (I6J02_20355) - 4839948..4840760 (+) 813 WP_201679589.1 siderophore-interacting protein -
  I6J02_RS20360 (I6J02_20360) - 4841890..4842180 (-) 291 WP_201679590.1 transcriptional repressor -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34438.63 Da        Isoelectric Point: 9.7557

>NTDB_id=527006 I6J02_RS20335 WP_201679585.1 4836313..4837254(+) (ceuB) [Sphingobacterium spiritivorum strain FDAARGOS_1145]
MRILFLIVLILLAIVSLFTGVKEISLSEIFHLSEDQLLVFTISRIPRTAALILAGGGLSIVGFIMQQITQNKFVSPTTAG
SLEAAKMGILFSLLLIPQESLVYKMLFALCFTFAASMLFMAMVRRIRFRSTVFIPLIGILFGNILGAISTFFAYKHNIVQ
NVQGWLMGDFSAVLQGQYETIYIILPAVLISYVYADRFTIAGMGESFSKNLGLPYLTVVNLGLFVVSVTVSVTIVTVGAI
PFLGLIIPNIVSMIYGDNLRKNLPYTALIGAIFLLVCDILGRVLIYPYEIPIGLMVGITGGIIFFLLILKRNR

Nucleotide


Download         Length: 942 bp        

>NTDB_id=527006 I6J02_RS20335 WP_201679585.1 4836313..4837254(+) (ceuB) [Sphingobacterium spiritivorum strain FDAARGOS_1145]
ATGCGCATTCTGTTTCTTATAGTTCTTATACTCCTGGCTATTGTTTCTCTTTTTACAGGAGTCAAAGAGATTTCTCTTTC
TGAGATCTTCCATCTGTCGGAAGATCAGCTACTGGTCTTTACGATCAGCAGAATTCCACGTACAGCGGCACTGATACTGG
CCGGAGGAGGTCTCAGTATTGTCGGATTTATTATGCAGCAGATTACACAAAACAAATTTGTGTCACCAACTACGGCAGGT
TCTCTGGAAGCTGCAAAAATGGGAATCCTTTTCAGTTTACTACTCATCCCACAGGAATCACTGGTCTATAAAATGCTCTT
TGCTTTGTGCTTTACCTTTGCTGCAAGTATGCTGTTCATGGCTATGGTAAGGCGTATTCGCTTCCGGAGTACGGTATTCA
TTCCGCTGATTGGTATTCTATTCGGAAATATTCTGGGAGCAATCTCTACATTTTTTGCCTATAAGCATAATATTGTCCAA
AATGTACAAGGATGGTTAATGGGCGATTTTTCCGCAGTTCTTCAGGGACAATATGAAACCATCTACATTATTTTGCCTGC
CGTGTTGATCAGTTATGTCTATGCAGACCGCTTTACTATTGCAGGAATGGGGGAGAGTTTTTCAAAAAACCTCGGACTTC
CCTATCTGACAGTTGTCAATCTGGGGTTATTTGTAGTTTCAGTTACTGTGAGTGTCACTATTGTCACCGTAGGTGCTATA
CCCTTTTTAGGGCTTATCATTCCTAATATTGTCAGTATGATATACGGCGACAATCTCCGCAAAAATCTGCCTTATACGGC
ATTGATAGGTGCTATTTTTCTTTTAGTATGCGATATACTGGGCAGAGTTCTTATATATCCCTACGAAATCCCCATCGGAC
TGATGGTCGGAATTACAGGGGGAATTATCTTCTTTTTACTGATCCTAAAACGTAACAGATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.508

97.444

0.482