Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6976_RS00395 Genome accession   NZ_CP082202
Coordinates   68235..68825 (+) Length   196 a.a.
NCBI ID   WP_044677093.1    Uniprot ID   -
Organism   Streptococcus suis strain SS389     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63235..73825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6976_RS00385 (K6976_00385) - 64627..66150 (+) 1524 WP_222759595.1 quinol oxidase -
  K6976_RS00390 (K6976_00390) hexB 66268..68205 (+) 1938 WP_222759597.1 DNA mismatch repair endonuclease MutL Machinery gene
  K6976_RS00395 (K6976_00395) ruvA 68235..68825 (+) 591 WP_044677093.1 Holliday junction branch migration protein RuvA Machinery gene
  K6976_RS00400 (K6976_00400) - 69455..70024 (+) 570 WP_170241530.1 DNA-3-methyladenine glycosylase I -
  K6976_RS00405 (K6976_00405) cinA 70061..71242 (+) 1182 WP_222759599.1 competence/damage-inducible protein A Machinery gene
  K6976_RS00410 (K6976_00410) recA 71294..72445 (+) 1152 WP_024385069.1 recombinase RecA Machinery gene
  K6976_RS00415 (K6976_00415) spx 72681..73079 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  K6976_RS00420 (K6976_00420) - 73179..73445 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21766.15 Da        Isoelectric Point: 5.3292

>NTDB_id=527007 K6976_RS00395 WP_044677093.1 68235..68825(+) (ruvA) [Streptococcus suis strain SS389]
MYDYIKGMLTKITAKYIVVETHGVGYILQVANPYAYSAQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=527007 K6976_RS00395 WP_044677093.1 68235..68825(+) (ruvA) [Streptococcus suis strain SS389]
ATGTACGACTATATCAAAGGAATGTTAACAAAAATCACTGCAAAATATATTGTGGTAGAAACGCATGGAGTAGGATATAT
CTTGCAAGTTGCTAACCCCTACGCCTATTCAGCACAAGTCCAGCAAGAAGTGACGGTCTATACGCATCAGGTGATTCGTG
AAGACGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

74.619

100

0.75
  ruvA Streptococcus pneumoniae D39

74.619

100

0.75
  ruvA Streptococcus pneumoniae TIGR4

74.619

100

0.75
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403