Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   I6J10_RS05155 Genome accession   NZ_CP068061
Coordinates   1061898..1062215 (-) Length   105 a.a.
NCBI ID   WP_016911890.1    Uniprot ID   -
Organism   Mammaliicoccus vitulinus strain FDAARGOS_1153     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1056898..1067215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J10_RS05125 (I6J10_05125) gcvPA 1057437..1058780 (-) 1344 WP_126578702.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  I6J10_RS05130 (I6J10_05130) gcvT 1058792..1059880 (-) 1089 WP_107537285.1 glycine cleavage system aminomethyltransferase GcvT -
  I6J10_RS05135 (I6J10_05135) - 1060073..1060561 (-) 489 WP_016911895.1 shikimate kinase -
  I6J10_RS05140 (I6J10_05140) comGF 1060796..1061230 (-) 435 WP_016911893.1 competence type IV pilus minor pilin ComGF -
  I6J10_RS05145 (I6J10_05145) comGE 1061205..1061486 (-) 282 WP_016911892.1 competence type IV pilus minor pilin ComGE -
  I6J10_RS05150 (I6J10_05150) comGD 1061470..1061898 (-) 429 WP_016911891.1 competence type IV pilus minor pilin ComGD -
  I6J10_RS05155 (I6J10_05155) comGC 1061898..1062215 (-) 318 WP_016911890.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J10_RS05160 (I6J10_05160) comGB 1062229..1063266 (-) 1038 WP_119595883.1 competence type IV pilus assembly protein ComGB -
  I6J10_RS05165 (I6J10_05165) comGA 1063259..1064161 (-) 903 WP_107537366.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J10_RS05170 (I6J10_05170) - 1064315..1064560 (+) 246 WP_016911887.1 DUF2626 family protein -
  I6J10_RS05175 (I6J10_05175) - 1064597..1065229 (-) 633 WP_016911886.1 MBL fold metallo-hydrolase -
  I6J10_RS05180 (I6J10_05180) - 1065329..1065568 (+) 240 WP_016911885.1 DUF2759 domain-containing protein -
  I6J10_RS05185 (I6J10_05185) - 1065598..1065912 (-) 315 WP_016911884.1 MTH1187 family thiamine-binding protein -
  I6J10_RS05190 (I6J10_05190) - 1065912..1066883 (-) 972 WP_016911883.1 ROK family glucokinase -
  I6J10_RS05195 (I6J10_05195) - 1066880..1067071 (-) 192 WP_016911882.1 YqgQ family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11536.67 Da        Isoelectric Point: 8.2633

>NTDB_id=526839 I6J10_RS05155 WP_016911890.1 1061898..1062215(-) (comGC) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
MKKFKLLCKKEGFTLIEMLIVLLIISILLIIIIPNISKQSETVKSTGCQAQIKMVAGQVEAYTLKHDAKPNSVNDLVSDG
YINEKQLTCKSGESITLQNGEVVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=526839 I6J10_RS05155 WP_016911890.1 1061898..1062215(-) (comGC) [Mammaliicoccus vitulinus strain FDAARGOS_1153]
ATGAAAAAGTTTAAATTGCTATGTAAAAAAGAAGGGTTTACTTTAATTGAGATGTTGATAGTGCTTTTGATCATAAGCAT
TTTGTTAATCATCATCATACCTAATATTAGCAAACAATCAGAAACTGTTAAAAGCACTGGATGCCAAGCACAAATTAAAA
TGGTAGCTGGACAAGTAGAAGCATATACGTTAAAGCATGATGCTAAACCGAACTCAGTTAATGATTTAGTAAGTGATGGG
TATATAAATGAAAAGCAATTAACGTGTAAATCAGGTGAGAGCATTACATTACAAAATGGAGAAGTCGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

64.706

97.143

0.629
  comGC Staphylococcus aureus MW2

64.706

97.143

0.629
  comGC/cglC Streptococcus mitis SK321

41.748

98.095

0.41
  comGC Bacillus subtilis subsp. subtilis str. 168

46.237

88.571

0.41
  comGC/cglC Streptococcus pneumoniae Rx1

40.777

98.095

0.4
  comGC/cglC Streptococcus pneumoniae D39

40.777

98.095

0.4
  comGC/cglC Streptococcus pneumoniae R6

40.777

98.095

0.4
  comGC/cglC Streptococcus pneumoniae TIGR4

40.777

98.095

0.4
  comYC Streptococcus mutans UA159

48.276

82.857

0.4
  comYC Streptococcus mutans UA140

48.276

82.857

0.4
  comYC Streptococcus suis isolate S10

47.674

81.905

0.39
  comGC/cglC Streptococcus mitis NCTC 12261

44.944

84.762

0.381
  comYC Streptococcus gordonii str. Challis substr. CH1

45.349

81.905

0.371
  comGC Lactococcus lactis subsp. cremoris KW2

45.882

80.952

0.371