Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   I6J14_RS07530 Genome accession   NZ_CP068057
Coordinates   1506504..1507445 (-) Length   313 a.a.
NCBI ID   WP_003049251.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501504..1512445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS07490 (I6J14_07490) - 1501509..1502705 (-) 1197 WP_003049273.1 acetate kinase -
  I6J14_RS07495 (I6J14_07495) comYH 1502764..1503717 (-) 954 WP_115246884.1 class I SAM-dependent methyltransferase Machinery gene
  I6J14_RS07500 (I6J14_07500) comGG 1503780..1504103 (-) 324 WP_236593265.1 competence type IV pilus minor pilin ComGG -
  I6J14_RS07505 (I6J14_07505) comGF 1504132..1504572 (-) 441 WP_003049266.1 competence type IV pilus minor pilin ComGF -
  I6J14_RS07510 (I6J14_07510) comGE 1504553..1504849 (-) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE -
  I6J14_RS07515 (I6J14_07515) comGD 1504806..1505234 (-) 429 WP_115252504.1 competence type IV pilus minor pilin ComGD -
  I6J14_RS07520 (I6J14_07520) comYC 1505209..1505535 (-) 327 WP_115246891.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J14_RS07525 (I6J14_07525) comYB 1505537..1506568 (-) 1032 WP_003049254.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J14_RS07530 (I6J14_07530) comYA 1506504..1507445 (-) 942 WP_003049251.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J14_RS07535 (I6J14_07535) - 1507525..1507890 (-) 366 WP_003049248.1 DUF1033 family protein -
  I6J14_RS07540 (I6J14_07540) rpoC 1508094..1511735 (-) 3642 WP_115276307.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35181.29 Da        Isoelectric Point: 7.5609

>NTDB_id=526742 I6J14_RS07530 WP_003049251.1 1506504..1507445(-) (comYA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MVQALAKSILKEAEQVQAQDIYILPKEDQYELLVRVGDERRLVDVYRGDRMAHLISHFKFVAGMTVGEKRRCQVGSCDYD
IGEDTLLSLRLSSVGNYRGQESLVIRLLHHRQRSLHYWFDGLKTVARQIGGRGLYLFAGPVGSGKTTLMHQLIADYYQGA
QVISIEDPVEIKNHQALQLQVNDSIGMTYDNLIKLSLRHRPDILIIGEIRDSQTARAVIRASLTGALVFSTVHAKSISGV
YARLLELGVTRAELDNCLAFVAYQRLLNGGALIDSTQTEFEHYSPNQWNQQIDDLLAAGHLSPKQARIEKIIQ

Nucleotide


Download         Length: 942 bp        

>NTDB_id=526742 I6J14_RS07530 WP_003049251.1 1506504..1507445(-) (comYA) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGGTACAAGCATTAGCAAAATCTATTTTGAAAGAAGCTGAGCAGGTTCAAGCTCAAGATATCTATATTTTGCCAAAGGA
AGATCAGTATGAGTTATTGGTAAGGGTAGGAGACGAAAGGAGATTGGTGGATGTTTATCGGGGCGATCGGATGGCTCATC
TTATTAGTCACTTTAAGTTCGTTGCAGGAATGACTGTCGGTGAGAAACGACGCTGTCAAGTCGGTTCTTGTGATTATGAT
ATCGGTGAAGACACACTTTTGTCTCTACGCCTATCTAGTGTTGGAAATTACCGTGGACAAGAGAGTTTAGTGATTCGGTT
ACTGCATCATCGACAAAGAAGTTTACACTACTGGTTTGACGGACTGAAAACAGTCGCACGTCAGATTGGAGGCCGAGGGC
TCTATCTTTTTGCAGGTCCAGTCGGATCAGGGAAAACAACTTTGATGCACCAATTGATTGCTGATTATTATCAGGGAGCA
CAGGTCATTAGCATAGAGGATCCGGTGGAAATCAAAAATCATCAAGCGCTCCAATTACAAGTTAATGATAGTATTGGCAT
GACTTACGACAACTTGATCAAACTATCTTTACGGCATCGCCCTGATATTTTAATCATTGGTGAAATTCGAGACAGCCAGA
CAGCTAGAGCGGTTATTAGAGCAAGTTTAACAGGTGCCTTAGTATTTTCAACAGTGCATGCCAAAAGCATTTCTGGTGTT
TATGCCAGATTACTAGAACTAGGAGTGACAAGAGCAGAATTAGACAATTGTTTGGCTTTTGTTGCTTACCAACGATTGCT
TAATGGAGGGGCATTAATTGACTCAACTCAAACAGAATTTGAACACTACTCACCAAACCAATGGAATCAACAAATTGATG
ACCTTCTTGCAGCGGGACATCTCAGTCCGAAGCAAGCAAGGATCGAAAAAATTATCCAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

62.058

99.361

0.617
  comYA Streptococcus mutans UA159

62.058

99.361

0.617
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.935

99.042

0.613
  comYA Streptococcus gordonii str. Challis substr. CH1

61.415

99.361

0.61
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

60.772

99.361

0.604
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

60.45

99.361

0.601
  comGA/cglA/cilD Streptococcus pneumoniae D39

60.45

99.361

0.601
  comGA/cglA/cilD Streptococcus pneumoniae R6

60.45

99.361

0.601
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

60.45

99.361

0.601
  comGA Lactococcus lactis subsp. cremoris KW2

50.804

99.361

0.505