Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   I6J14_RS07525 Genome accession   NZ_CP068057
Coordinates   1505537..1506568 (-) Length   343 a.a.
NCBI ID   WP_003049254.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500537..1511568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS07485 (I6J14_07485) - 1500993..1501199 (-) 207 WP_003049274.1 helix-turn-helix transcriptional regulator -
  I6J14_RS07490 (I6J14_07490) - 1501509..1502705 (-) 1197 WP_003049273.1 acetate kinase -
  I6J14_RS07495 (I6J14_07495) comYH 1502764..1503717 (-) 954 WP_115246884.1 class I SAM-dependent methyltransferase Machinery gene
  I6J14_RS07500 (I6J14_07500) comGG 1503780..1504103 (-) 324 WP_236593265.1 competence type IV pilus minor pilin ComGG -
  I6J14_RS07505 (I6J14_07505) comGF 1504132..1504572 (-) 441 WP_003049266.1 competence type IV pilus minor pilin ComGF -
  I6J14_RS07510 (I6J14_07510) comGE 1504553..1504849 (-) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE -
  I6J14_RS07515 (I6J14_07515) comGD 1504806..1505234 (-) 429 WP_115252504.1 competence type IV pilus minor pilin ComGD -
  I6J14_RS07520 (I6J14_07520) comYC 1505209..1505535 (-) 327 WP_115246891.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J14_RS07525 (I6J14_07525) comYB 1505537..1506568 (-) 1032 WP_003049254.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J14_RS07530 (I6J14_07530) comYA 1506504..1507445 (-) 942 WP_003049251.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J14_RS07535 (I6J14_07535) - 1507525..1507890 (-) 366 WP_003049248.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 38959.32 Da        Isoelectric Point: 9.2064

>NTDB_id=526741 I6J14_RS07525 WP_003049254.1 1505537..1506568(-) (comYB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MTFLQRDISVRSKQGSKKLSSKERYKLIQLLANLLLTGFNLTEIIAFLTKSHLIPEPYVLRMEEALLKGRGLADMLAGIG
FSDAILTQISLADGHGNIETTLVNIQGYLNQMAKLKRKTIEVVTYPIILLVFLFVMMLGLRHYVMPHLEAQNQLTIFLTH
FPAIFFGIILFIGVLLGGIWLHWRSQSHLKLFTHLSAYPVLGKLLQQYLTAYYAREWGTLIGQGLELPVILDIMTMEKSL
FMQELAEDIRVSLLAGQAFHDKVATYPFFKKELSLMITYGEIKSKLGSELEIYAQESWAQFFSQLHQATQFIQPIIFLVI
ALTIVMIYAAILLPIYQNMGGVL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=526741 I6J14_RS07525 WP_003049254.1 1505537..1506568(-) (comYB) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGACCTTCTTGCAGCGGGACATCTCAGTCCGAAGCAAGCAAGGATCGAAAAAATTATCCAGTAAGGAACGATACAAACT
AATTCAGCTATTAGCTAACCTTTTGTTAACAGGATTTAACCTGACGGAGATAATAGCTTTCTTAACAAAAAGTCATCTGA
TTCCCGAGCCCTATGTTCTTCGTATGGAAGAAGCACTCTTAAAAGGTCGAGGGCTGGCAGATATGTTAGCTGGGATAGGT
TTTTCGGATGCTATTTTAACTCAAATTAGTTTAGCAGATGGTCACGGGAACATTGAGACGACGCTTGTTAATATTCAGGG
CTATCTCAACCAAATGGCTAAACTTAAACGAAAAACCATTGAAGTCGTCACCTATCCGATTATTCTTCTGGTATTTCTTT
TTGTAATGATGTTAGGGTTAAGGCATTATGTTATGCCTCACTTAGAAGCTCAAAATCAGCTTACTATTTTTCTCACTCAT
TTTCCAGCTATTTTCTTTGGTATTATCCTTTTTATCGGTGTACTGTTAGGAGGAATTTGGCTGCATTGGCGATCGCAAAG
TCACCTCAAGCTTTTTACTCACCTCAGTGCTTATCCTGTTTTAGGGAAACTCTTACAACAGTATCTGACGGCTTATTATG
CTAGAGAATGGGGAACATTGATTGGACAGGGACTTGAATTACCAGTCATTCTGGATATTATGACCATGGAGAAATCTTTA
TTTATGCAAGAATTGGCTGAAGATATTCGAGTTAGTTTACTGGCAGGACAAGCTTTTCATGATAAGGTAGCTACCTATCC
TTTCTTTAAAAAAGAGTTAAGTTTGATGATTACTTATGGAGAGATTAAATCCAAGTTAGGAAGTGAACTAGAGATTTATG
CTCAAGAGAGTTGGGCTCAGTTTTTTAGCCAACTTCATCAAGCAACTCAGTTTATTCAACCGATTATCTTTTTAGTGATT
GCTCTGACGATTGTCATGATTTATGCAGCAATTTTATTACCAATTTATCAAAATATGGGAGGCGTTTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

53.097

98.834

0.525
  comYB Streptococcus mutans UA159

53.097

98.834

0.525
  comYB Streptococcus gordonii str. Challis substr. CH1

48.083

98.834

0.475
  comGB/cglB Streptococcus mitis NCTC 12261

45.97

97.668

0.449
  comGB/cglB Streptococcus mitis SK321

45.345

97.085

0.44
  comGB/cglB Streptococcus pneumoniae Rx1

43.844

97.085

0.426
  comGB/cglB Streptococcus pneumoniae D39

43.844

97.085

0.426
  comGB/cglB Streptococcus pneumoniae R6

43.844

97.085

0.426
  comGB/cglB Streptococcus pneumoniae TIGR4

43.844

97.085

0.426
  comGB Lactococcus lactis subsp. cremoris KW2

42.773

98.834

0.423