Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   I6J14_RS07520 Genome accession   NZ_CP068057
Coordinates   1505209..1505535 (-) Length   108 a.a.
NCBI ID   WP_115246891.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1157     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1500209..1510535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6J14_RS07480 (I6J14_07480) - 1500232..1500837 (-) 606 WP_236593264.1 CPBP family intramembrane glutamic endopeptidase -
  I6J14_RS07485 (I6J14_07485) - 1500993..1501199 (-) 207 WP_003049274.1 helix-turn-helix transcriptional regulator -
  I6J14_RS07490 (I6J14_07490) - 1501509..1502705 (-) 1197 WP_003049273.1 acetate kinase -
  I6J14_RS07495 (I6J14_07495) comYH 1502764..1503717 (-) 954 WP_115246884.1 class I SAM-dependent methyltransferase Machinery gene
  I6J14_RS07500 (I6J14_07500) comGG 1503780..1504103 (-) 324 WP_236593265.1 competence type IV pilus minor pilin ComGG -
  I6J14_RS07505 (I6J14_07505) comGF 1504132..1504572 (-) 441 WP_003049266.1 competence type IV pilus minor pilin ComGF -
  I6J14_RS07510 (I6J14_07510) comGE 1504553..1504849 (-) 297 WP_003061797.1 competence type IV pilus minor pilin ComGE -
  I6J14_RS07515 (I6J14_07515) comGD 1504806..1505234 (-) 429 WP_115252504.1 competence type IV pilus minor pilin ComGD -
  I6J14_RS07520 (I6J14_07520) comYC 1505209..1505535 (-) 327 WP_115246891.1 competence type IV pilus major pilin ComGC Machinery gene
  I6J14_RS07525 (I6J14_07525) comYB 1505537..1506568 (-) 1032 WP_003049254.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6J14_RS07530 (I6J14_07530) comYA 1506504..1507445 (-) 942 WP_003049251.1 competence type IV pilus ATPase ComGA Machinery gene
  I6J14_RS07535 (I6J14_07535) - 1507525..1507890 (-) 366 WP_003049248.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12399.39 Da        Isoelectric Point: 9.6248

>NTDB_id=526740 I6J14_RS07520 WP_115246891.1 1505209..1505535(-) (comYC) [Streptococcus dysgalactiae strain FDAARGOS_1157]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLQQLKN
DGSITDKQVKAYTDYYEKHTNEKSSLKP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=526740 I6J14_RS07520 WP_115246891.1 1505209..1505535(-) (comYC) [Streptococcus dysgalactiae strain FDAARGOS_1157]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTGCTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTATGAATTATCGCAAGGATCAAAACCAAGTTTACAACAGTTGAAGAAC
GATGGCAGTATTACAGATAAACAGGTAAAAGCTTACACAGACTATTACGAAAAACATACCAATGAAAAGTCCAGTCTTAA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

57.426

93.519

0.537
  comGC Lactococcus lactis subsp. cremoris KW2

52.336

99.074

0.519
  comGC/cglC Streptococcus mitis SK321

55.556

91.667

0.509
  comGC/cglC Streptococcus pneumoniae TIGR4

54.545

91.667

0.5
  comGC/cglC Streptococcus mitis NCTC 12261

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae Rx1

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae D39

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae R6

54.545

91.667

0.5
  comYC Streptococcus mutans UA159

55.319

87.037

0.481
  comYC Streptococcus mutans UA140

55.319

87.037

0.481
  comYC Streptococcus suis isolate S10

50.562

82.407

0.417