Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JKJ11_RS16570 Genome accession   NZ_CP068024
Coordinates   3547299..3548399 (-) Length   366 a.a.
NCBI ID   WP_252038569.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43133     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3542299..3553399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JKJ11_RS16540 (JKJ11_16560) hemF 3542885..3543790 (-) 906 WP_252038567.1 oxygen-dependent coproporphyrinogen oxidase -
  JKJ11_RS16545 (JKJ11_16565) - 3543801..3544358 (-) 558 WP_006072995.1 L-threonylcarbamoyladenylate synthase -
  JKJ11_RS16550 (JKJ11_16570) purE 3544542..3545027 (+) 486 WP_006072996.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JKJ11_RS16555 (JKJ11_16575) - 3545030..3546160 (+) 1131 WP_252038568.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JKJ11_RS16560 (JKJ11_16580) - 3546211..3546783 (-) 573 WP_063604586.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  JKJ11_RS16565 (JKJ11_16585) - 3546820..3547296 (-) 477 WP_006072999.1 DUF494 family protein -
  JKJ11_RS16570 (JKJ11_16590) dprA 3547299..3548399 (-) 1101 WP_252038569.1 DNA-processing protein DprA Machinery gene
  JKJ11_RS16575 (JKJ11_16595) - 3548392..3549480 (-) 1089 WP_252038570.1 LysM domain-containing protein -
  JKJ11_RS16580 (JKJ11_16600) def 3549596..3550105 (+) 510 WP_006073002.1 peptide deformylase -
  JKJ11_RS16585 (JKJ11_16605) fmt 3550123..3551070 (+) 948 WP_006073003.1 methionyl-tRNA formyltransferase -
  JKJ11_RS16590 (JKJ11_16610) rsmB 3551161..3552438 (+) 1278 WP_062463686.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39190.06 Da        Isoelectric Point: 7.0044

>NTDB_id=526352 JKJ11_RS16570 WP_252038569.1 3547299..3548399(-) (dprA) [Vibrio sp. SCSIO 43133]
MSDARTLAWLRLSLCPGIGAVTFEKLRAIDSPLNIVSYSPQELASIGLKSHQVAFIHHQSIALAEQALAWASGERRYIVT
SGDKAYPPLLSETKGAPPVLFVEGQLSLLAAPQIAMVGSRNATLEGLEIARSYASTFAKHDYCVTSGLALGIDGHAHQGA
LDAQGPTIAVLGSGLSQIYPARHKSLASRIAEQGALVSEHLPSVKPRAEHFPRRNRIVSGLSLAVLVVEATEKSGSLITA
KYAAEQGRDVFAIPGSIRHPFHSGCHSLIKLGACLVQSPNDLLSEIESLTNWSKKVQPTLFDQVIDKEELPFPDLLANVG
IEATPVDILAQKTHIPVQEVMQQLLELELLGHVVAVNGGYILKGRG

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=526352 JKJ11_RS16570 WP_252038569.1 3547299..3548399(-) (dprA) [Vibrio sp. SCSIO 43133]
GTGAGTGACGCTCGCACTCTAGCTTGGCTGCGGCTTTCTCTGTGCCCCGGCATCGGTGCTGTCACGTTCGAAAAGTTACG
AGCGATAGATAGTCCGCTCAACATTGTTAGCTATTCACCACAGGAACTGGCCTCTATTGGTTTGAAGTCGCATCAAGTGG
CGTTTATCCATCATCAATCGATAGCGCTTGCTGAACAGGCTCTCGCTTGGGCGTCGGGAGAGCGTCGCTACATTGTGACC
AGTGGCGATAAGGCGTATCCGCCACTATTGAGTGAAACCAAGGGAGCGCCGCCGGTTTTATTTGTTGAGGGGCAGTTATC
CTTACTTGCGGCACCTCAAATTGCCATGGTGGGAAGTCGCAATGCTACTTTGGAAGGGCTAGAGATTGCTCGCAGCTATG
CCAGTACATTTGCAAAGCATGATTACTGCGTGACGAGTGGTTTAGCTTTGGGCATTGACGGTCACGCTCATCAAGGAGCG
CTGGATGCACAAGGTCCTACTATTGCCGTATTGGGTTCTGGTTTATCGCAAATCTATCCGGCACGTCATAAGTCATTGGC
CTCTCGCATTGCAGAGCAAGGTGCGTTAGTCAGTGAACATTTACCTTCGGTAAAACCTAGGGCTGAGCACTTCCCGCGTC
GTAACCGAATCGTAAGTGGACTGTCTTTAGCTGTATTGGTGGTTGAAGCGACAGAGAAAAGTGGTTCGTTGATTACTGCT
AAATACGCGGCTGAGCAAGGGCGAGATGTTTTTGCCATTCCTGGTTCAATTCGCCACCCTTTCCATAGTGGTTGTCACTC
GTTGATCAAATTGGGAGCTTGTTTGGTGCAGTCTCCTAATGATCTTCTTAGTGAAATAGAATCTCTCACCAACTGGTCTA
AAAAAGTACAACCGACACTTTTTGACCAAGTTATTGATAAAGAAGAATTGCCATTTCCCGATCTGTTGGCTAACGTAGGA
ATAGAGGCAACACCAGTTGATATTTTAGCGCAAAAGACCCATATTCCTGTGCAAGAGGTCATGCAACAGCTACTAGAGCT
CGAGTTATTAGGGCATGTTGTTGCAGTTAACGGTGGTTATATTCTTAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(315-359)

DNA recombination-mediator protein A (DNA_processg_A)

(78-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

61.475

100

0.615
  dprA Vibrio cholerae strain A1552

56.334

100

0.571
  dprA Glaesserella parasuis strain SC1401

45.799

100

0.462
  dprA Legionella pneumophila strain ERS1305867

43.22

96.721

0.418
  dprA Haemophilus influenzae Rd KW20

43.064

94.536

0.407
  dprA Neisseria gonorrhoeae MS11

37.887

100

0.402
  dprA Neisseria meningitidis MC58

37.692

100

0.402
  dprA Neisseria meningitidis strain C311

37.692

100

0.402
  dprA Neisseria gonorrhoeae strain FA1090

37.629

100

0.399
  dprA Acinetobacter baumannii strain A118

42.462

88.798

0.377
  dprA Acinetobacter baumannii D1279779

42.154

88.798

0.374
  dprA Acinetobacter baylyi ADP1

43.607

83.333

0.363