Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   JJN14_RS02240 Genome accession   NZ_CP067992
Coordinates   442130..442525 (+) Length   131 a.a.
NCBI ID   WP_201058788.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 437130..447525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS02215 (JJN14_02215) - 438830..439903 (+) 1074 WP_201058784.1 N-acetylmuramoyl-L-alanine amidase family protein -
  JJN14_RS02220 (JJN14_02220) - 439994..440293 (+) 300 WP_201058785.1 DUF4651 domain-containing protein -
  JJN14_RS02225 (JJN14_02225) - 440290..440607 (+) 318 WP_020900992.1 thioredoxin family protein -
  JJN14_RS02230 (JJN14_02230) ytpR 440623..441249 (+) 627 WP_201058786.1 YtpR family tRNA-binding protein -
  JJN14_RS02235 (JJN14_02235) - 441291..442052 (+) 762 WP_201058787.1 SDR family NAD(P)-dependent oxidoreductase -
  JJN14_RS02240 (JJN14_02240) ssbB/cilA 442130..442525 (+) 396 WP_201058788.1 single-stranded DNA-binding protein Machinery gene
  JJN14_RS02245 (JJN14_02245) groES 442681..442965 (+) 285 WP_033688179.1 co-chaperone GroES -
  JJN14_RS02250 (JJN14_02250) groL 442981..444603 (+) 1623 WP_201058789.1 chaperonin GroEL -
  JJN14_RS02255 (JJN14_02255) - 444741..445508 (+) 768 WP_000567569.1 epoxyqueuosine reductase QueH -
  JJN14_RS02260 (JJN14_02260) - 445578..446111 (-) 534 WP_000775316.1 DUF402 domain-containing protein -
  JJN14_RS02265 (JJN14_02265) recX 446200..446976 (-) 777 WP_201058790.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14908.84 Da        Isoelectric Point: 5.9409

>NTDB_id=526144 JJN14_RS02240 WP_201058788.1 442130..442525(+) (ssbB/cilA) [Streptococcus mitis strain S022-V7-A3]
MYNKVILIGRLTSTPELHKTSNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATRGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=526144 JJN14_RS02240 WP_201058788.1 442130..442525(+) (ssbB/cilA) [Streptococcus mitis strain S022-V7-A3]
ATGTATAATAAAGTTATCCTAATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAGCAATGACAAGTCAGTAGC
ACGAGCAACTATTGCTGTTAACCGTCGATATAAAGACCAAAATGGTGAACGTGAAGCTGATTTTGTTAATATGGTTTTAT
GGGGTAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAGAGGAAGTCTCATTTCAGTGGATGGAGAATTACGTACCCGT
CGTTTTGAGAAAAATGGCCAGATGAATTATGTGACCGAAGTACTTGTTACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCCATGCGTGAAAATAACGCAGGTCAAGACCTAGCGGACTTGGTTTTGGAAGAGGAAGAACTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

98.473

100

0.985
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus mitis SK321

97.71

100

0.977
  ssbB/cilA Streptococcus mitis NCTC 12261

96.183

100

0.962
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

44.444

82.443

0.366