Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JC774_RS16490 Genome accession   NZ_CP066179
Coordinates   3155931..3156269 (-) Length   112 a.a.
NCBI ID   WP_041809657.1    Uniprot ID   A0AAX2CG79
Organism   Bacillus cytotoxicus strain SM2.8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3150931..3161269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC774_RS16470 (JC774_16475) - 3152912..3153688 (-) 777 WP_087098567.1 class I SAM-dependent methyltransferase -
  JC774_RS16475 (JC774_16480) - 3153743..3154177 (-) 435 WP_087098565.1 BrxA/BrxB family bacilliredoxin -
  JC774_RS16480 (JC774_16485) - 3154262..3154645 (-) 384 WP_012094101.1 DUF393 domain-containing protein -
  JC774_RS16485 (JC774_16490) - 3154647..3155774 (-) 1128 WP_048722873.1 conserved virulence factor C family protein -
  JC774_RS16490 (JC774_16495) ssbA 3155931..3156269 (-) 339 WP_041809657.1 single-stranded DNA-binding protein Machinery gene
  JC774_RS16495 (JC774_16500) - 3156727..3157458 (-) 732 WP_087098563.1 Bax inhibitor-1/YccA family protein -
  JC774_RS16500 (JC774_16505) - 3157534..3159426 (-) 1893 WP_087098561.1 ABC-F family ATP-binding cassette domain-containing protein -
  JC774_RS16505 (JC774_16510) - 3159423..3160070 (-) 648 WP_012094096.1 HD domain-containing protein -
  JC774_RS16510 (JC774_16515) - 3160179..3160832 (+) 654 WP_087098559.1 hypothetical protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 13080.04 Da        Isoelectric Point: 9.7832

>NTDB_id=518163 JC774_RS16490 WP_041809657.1 3155931..3156269(-) (ssbA) [Bacillus cytotoxicus strain SM2.8]
MMNRVVLVGRLTKDPELYYTKQGIPYARICIAVNRGFRNSLGEQQADYIYCVVWRKSAENVLEYCRKGSLVGITGRIHTS
NYENDQGKRIYRTEVVIERITFLERKREISNG

Nucleotide


Download         Length: 339 bp        

>NTDB_id=518163 JC774_RS16490 WP_041809657.1 3155931..3156269(-) (ssbA) [Bacillus cytotoxicus strain SM2.8]
ATGATGAATCGAGTTGTATTAGTTGGAAGATTAACAAAAGATCCAGAATTATACTATACAAAGCAAGGAATTCCTTATGC
ACGTATTTGTATTGCTGTAAATAGAGGATTTCGAAATAGTTTAGGGGAACAACAAGCAGATTATATTTATTGTGTTGTTT
GGAGAAAGTCAGCTGAGAATGTATTAGAGTACTGCCGGAAAGGTTCTCTCGTTGGCATTACGGGCCGTATTCATACGAGC
AATTACGAGAATGATCAAGGAAAGAGAATATATAGAACAGAAGTTGTAATTGAAAGAATTACGTTTTTAGAAAGGAAAAG
AGAGATTTCAAATGGATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

54.717

94.643

0.518
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.774

94.643

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.667

96.429

0.402
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.623

94.643

0.375
  ssbB/cilA Streptococcus mitis NCTC 12261

39.623

94.643

0.375
  ssbB Lactococcus lactis subsp. cremoris KW2

43.158

84.821

0.366
  ssbB/cilA Streptococcus pneumoniae Rx1

38.679

94.643

0.366
  ssbB/cilA Streptococcus pneumoniae D39

38.679

94.643

0.366
  ssbB/cilA Streptococcus pneumoniae R6

38.679

94.643

0.366
  ssbB/cilA Streptococcus mitis SK321

38.679

94.643

0.366
  ssbA Streptococcus mutans UA159

38.679

94.643

0.366