Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   JDY60_RS00625 Genome accession   NZ_CP066172
Coordinates   156955..157350 (+) Length   131 a.a.
NCBI ID   WP_000282436.1    Uniprot ID   A0A0F2DZ08
Organism   Streptococcus oralis strain SF100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 151955..162350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS00595 (JDY60_00595) rpoE 152141..152731 (+) 591 WP_000418415.1 DNA-directed RNA polymerase subunit delta -
  JDY60_RS00600 (JDY60_00600) - 153047..154654 (+) 1608 WP_200370916.1 CTP synthase -
  JDY60_RS00605 (JDY60_00605) - 154819..155118 (+) 300 WP_002875970.1 DUF4651 domain-containing protein -
  JDY60_RS00610 (JDY60_00610) - 155115..155432 (+) 318 WP_200370917.1 thioredoxin family protein -
  JDY60_RS00615 (JDY60_00615) ytpR 155448..156074 (+) 627 WP_061587504.1 YtpR family tRNA-binding protein -
  JDY60_RS00620 (JDY60_00620) - 156116..156877 (+) 762 WP_001107742.1 SDR family NAD(P)-dependent oxidoreductase -
  JDY60_RS00625 (JDY60_00625) ssbB/cilA 156955..157350 (+) 396 WP_000282436.1 single-stranded DNA-binding protein Machinery gene
  JDY60_RS00630 (JDY60_00630) groES 157507..157791 (+) 285 WP_070567104.1 co-chaperone GroES -
  JDY60_RS00635 (JDY60_00635) groL 157807..159429 (+) 1623 WP_000031557.1 chaperonin GroEL -
  JDY60_RS00640 (JDY60_00640) - 159554..160321 (+) 768 WP_000567566.1 epoxyqueuosine reductase QueH -
  JDY60_RS00645 (JDY60_00645) - 160391..160924 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  JDY60_RS00650 (JDY60_00650) recX 161013..161789 (-) 777 WP_200370918.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14833.75 Da        Isoelectric Point: 5.9409

>NTDB_id=518031 JDY60_RS00625 WP_000282436.1 156955..157350(+) (ssbB/cilA) [Streptococcus oralis strain SF100]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=518031 JDY60_RS00625 WP_000282436.1 156955..157350(+) (ssbB/cilA) [Streptococcus oralis strain SF100]
ATGTATAATAAAGTTATTCTTATTGGACGTTTAACGTCTACACCAGAACTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGTGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGGGAACGTGAAGCTGACTTTGTCAATCTTGTTCTTT
GGGGGAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTACGTGACTGAAGTTCTTGCCACAGGATTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAATAACGCAGGACAGGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2DZ08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

97.71

100

0.977
  ssbB/cilA Streptococcus mitis NCTC 12261

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae Rx1

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae D39

96.947

100

0.969
  ssbB/cilA Streptococcus pneumoniae R6

96.947

100

0.969
  ssbB/cilA Streptococcus mitis SK321

96.947

100

0.969
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382