Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ITG10_RS07525 Genome accession   NZ_CP066149
Coordinates   1666261..1667373 (-) Length   370 a.a.
NCBI ID   WP_248386761.1    Uniprot ID   -
Organism   Vibrio sp. ED004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1661261..1672373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ITG10_RS07495 (ITG10_07415) hemF 1661782..1662699 (-) 918 WP_017631524.1 oxygen-dependent coproporphyrinogen oxidase -
  ITG10_RS07500 (ITG10_07420) - 1662720..1663277 (-) 558 WP_017631525.1 L-threonylcarbamoyladenylate synthase -
  ITG10_RS07505 (ITG10_07425) purE 1663472..1663957 (+) 486 WP_017631526.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  ITG10_RS07510 (ITG10_07430) - 1663963..1665093 (+) 1131 WP_017631527.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  ITG10_RS07515 (ITG10_07435) - 1665199..1665768 (-) 570 WP_017631528.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  ITG10_RS07520 (ITG10_07440) - 1665781..1666257 (-) 477 WP_017631529.1 DUF494 family protein -
  ITG10_RS07525 (ITG10_07445) dprA 1666261..1667373 (-) 1113 WP_248386761.1 DNA-processing protein DprA Machinery gene
  ITG10_RS07530 (ITG10_07450) - 1667370..1668461 (-) 1092 WP_017631530.1 LysM peptidoglycan-binding domain-containing protein -
  ITG10_RS07535 (ITG10_07455) def 1668602..1669114 (+) 513 WP_017058772.1 peptide deformylase -
  ITG10_RS07540 (ITG10_07460) fmt 1669152..1670099 (+) 948 WP_017631531.1 methionyl-tRNA formyltransferase -
  ITG10_RS07545 (ITG10_07465) rsmB 1670191..1671471 (+) 1281 WP_017631532.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40175.00 Da        Isoelectric Point: 7.5357

>NTDB_id=517880 ITG10_RS07525 WP_248386761.1 1666261..1667373(-) (dprA) [Vibrio sp. ED004]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQAIGLSAKQISYLREQAPREVEACLAWQARQPNHHII
TPNCLHYPKLLNEIASAPSVLFVKGHVEKLIEPQIAMVGSRNASLEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLAERICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQNAQDVLIEIKSLLNWSIDQQPSLFEPTQNKGENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=517880 ITG10_RS07525 WP_248386761.1 1666261..1667373(-) (dprA) [Vibrio sp. ED004]
GTGAATGAGCAACAACTGAGTGCTTGGCTAACTCTAAGTTTTGTTCCGCAATTGGGTGGCAAACGCCTTTCCCGCCTGCT
GAGTATCGATTCCCCTTCGAACATTGTTGGCTACTCAAGTCAGCAGCTGCAAGCTATCGGTTTGTCAGCCAAGCAAATAT
CTTATTTAAGAGAGCAAGCCCCAAGAGAAGTTGAGGCTTGTCTCGCGTGGCAAGCAAGACAACCCAACCATCACATCATT
ACTCCTAATTGCTTACATTATCCCAAACTGCTGAACGAGATAGCTTCTGCGCCCAGTGTTCTTTTCGTTAAAGGACACGT
TGAAAAGCTGATTGAACCTCAAATCGCCATGGTCGGCAGTCGCAATGCCAGTCTCGAAGGGCTGCAAACCGCGAAGTCCT
TCGCCAAAGAGTTCGTCCAAAACGGTTTGATTGTCACCAGTGGCTTAGCTTTAGGCATCGATGGCTATGCACATGATGGT
GCTCTAGATAAGGGAGGAGAAACTTTTGCAGTGTTGGGTTCTGGTTTGGACTCCATTTATCCTGCCCGCCACCGAAATCT
AGCTGAGAGGATCTGTGAGAATGGCGCGCTGATTTCAGAGTTTCGCCCAAGTGCTAAACCAAGACCTGAACATTTTCCCC
GTCGTAACCGTATTATAAGTGGCTTGTCGTTAGGCACTTTAGTGGTGGAAGCGGCTGAGAAGAGTGGTTCTTTGATTACG
GCTCGCTATGCCATGGAGCAAGGGAGAGAGGTGTTTGCGCTGCCCGGTTCAATTCATAATCCAACCAGTCGCGGAGGTAA
CAGTCTCATCAAAGCTGGAGCATGTTTAGTGCAAAATGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAAACTGGT
CTATAGATCAGCAGCCGAGCTTATTCGAACCTACGCAGAATAAGGGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAAGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.48

99.73

0.673
  dprA Vibrio cholerae strain A1552

58.824

100

0.595
  dprA Glaesserella parasuis strain SC1401

48.118

100

0.484
  dprA Legionella pneumophila strain ERS1305867

47.256

88.649

0.419
  dprA Neisseria meningitidis MC58

38.287

100

0.411
  dprA Neisseria meningitidis strain C311

38.287

100

0.411
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.397
  dprA Neisseria gonorrhoeae MS11

37.215

100

0.397
  dprA Acinetobacter baumannii D1279779

41.056

92.162

0.378
  dprA Acinetobacter baumannii strain A118

41.176

91.892

0.378
  dprA Acinetobacter baylyi ADP1

40

90.541

0.362