Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6H73_RS09635 Genome accession   NZ_CP066073
Coordinates   1930803..1931171 (-) Length   122 a.a.
NCBI ID   WP_003057310.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain FDAARGOS_1016     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1905395..1941408 1930803..1931171 within 0


Gene organization within MGE regions


Location: 1905395..1941408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H73_RS09460 (I6H73_09460) - 1905395..1906015 (-) 621 WP_003058266.1 hypothetical protein -
  I6H73_RS09465 (I6H73_09465) - 1906738..1906941 (+) 204 WP_003055570.1 helix-turn-helix transcriptional regulator -
  I6H73_RS09470 (I6H73_09470) - 1907025..1907777 (-) 753 WP_115261972.1 CHAP domain-containing protein -
  I6H73_RS09475 (I6H73_09475) - 1907899..1908126 (-) 228 WP_003058873.1 phage holin -
  I6H73_RS09480 (I6H73_09480) - 1908123..1908395 (-) 273 WP_003058867.1 hypothetical protein -
  I6H73_RS09485 (I6H73_09485) - 1908407..1909018 (-) 612 WP_003058877.1 hypothetical protein -
  I6H73_RS09490 (I6H73_09490) - 1909021..1909182 (-) 162 WP_002988795.1 hypothetical protein -
  I6H73_RS09495 (I6H73_09495) - 1909191..1911098 (-) 1908 WP_003058869.1 gp58-like family protein -
  I6H73_RS09500 (I6H73_09500) - 1911109..1911744 (-) 636 WP_003058871.1 hypothetical protein -
  I6H73_RS09505 (I6H73_09505) - 1911744..1912850 (-) 1107 WP_003058879.1 hypothetical protein -
  I6H73_RS09510 (I6H73_09510) - 1912847..1914901 (-) 2055 WP_115261973.1 phage tail spike protein -
  I6H73_RS09515 (I6H73_09515) - 1914898..1915608 (-) 711 WP_037587950.1 phage tail domain-containing protein -
  I6H73_RS09520 (I6H73_09520) - 1915605..1919006 (-) 3402 WP_003057308.1 phage tail tape measure protein -
  I6H73_RS09525 (I6H73_09525) - 1919080..1919238 (-) 159 WP_002986162.1 hypothetical protein -
  I6H73_RS09530 (I6H73_09530) - 1919274..1919645 (-) 372 WP_002986164.1 hypothetical protein -
  I6H73_RS09535 (I6H73_09535) - 1919666..1920253 (-) 588 WP_003057267.1 hypothetical protein -
  I6H73_RS09540 (I6H73_09540) - 1920264..1920686 (-) 423 WP_002986168.1 hypothetical protein -
  I6H73_RS09545 (I6H73_09545) - 1920695..1921066 (-) 372 WP_002986170.1 hypothetical protein -
  I6H73_RS09550 (I6H73_09550) - 1921038..1921415 (-) 378 WP_003057300.1 hypothetical protein -
  I6H73_RS09555 (I6H73_09555) - 1921417..1921710 (-) 294 WP_003057269.1 phage gp6-like head-tail connector protein -
  I6H73_RS09560 (I6H73_09560) - 1921730..1922017 (-) 288 WP_002986176.1 hypothetical protein -
  I6H73_RS09565 (I6H73_09565) - 1922032..1923225 (-) 1194 WP_002986177.1 phage major capsid protein -
  I6H73_RS09570 (I6H73_09570) - 1923260..1923976 (-) 717 WP_003057295.1 head maturation protease, ClpP-related -
  I6H73_RS09575 (I6H73_09575) - 1923980..1925215 (-) 1236 WP_003057282.1 phage portal protein -
  I6H73_RS09580 (I6H73_09580) - 1925414..1927072 (-) 1659 WP_002986185.1 terminase TerL endonuclease subunit -
  I6H73_RS09585 (I6H73_09585) - 1927053..1927400 (-) 348 WP_002986187.1 hypothetical protein -
  I6H73_RS09590 (I6H73_09590) - 1927522..1927842 (-) 321 WP_232621202.1 HNH endonuclease -
  I6H73_RS09595 (I6H73_09595) - 1927848..1928141 (-) 294 WP_002986191.1 hypothetical protein -
  I6H73_RS09600 (I6H73_09600) - 1928313..1928876 (-) 564 WP_032467304.1 site-specific integrase -
  I6H73_RS09605 (I6H73_09605) - 1928971..1929390 (-) 420 WP_002986196.1 DUF1492 domain-containing protein -
  I6H73_RS09610 (I6H73_09610) - 1929414..1929614 (-) 201 WP_003057287.1 hypothetical protein -
  I6H73_RS09615 (I6H73_09615) - 1929721..1929900 (-) 180 WP_000694116.1 hypothetical protein -
  I6H73_RS09620 (I6H73_09620) - 1929897..1930145 (-) 249 WP_115261974.1 hypothetical protein -
  I6H73_RS09625 (I6H73_09625) - 1930148..1930486 (-) 339 WP_003057278.1 helix-turn-helix transcriptional regulator -
  I6H73_RS09630 (I6H73_09630) - 1930483..1930764 (-) 282 WP_003057258.1 hypothetical protein -
  I6H73_RS09635 (I6H73_09635) ssbA 1930803..1931171 (-) 369 WP_003057310.1 single-stranded DNA-binding protein Machinery gene
  I6H73_RS09640 (I6H73_09640) - 1931168..1931389 (-) 222 WP_003057301.1 hypothetical protein -
  I6H73_RS09645 (I6H73_09645) - 1931382..1931714 (-) 333 WP_003057265.1 hypothetical protein -
  I6H73_RS11640 - 1931707..1931880 (-) 174 WP_080568646.1 DUF3310 domain-containing protein -
  I6H73_RS11645 - 1932037..1932306 (-) 270 Protein_1907 hypothetical protein -
  I6H73_RS09655 (I6H73_09655) - 1932408..1932647 (-) 240 WP_003057263.1 hypothetical protein -
  I6H73_RS09660 (I6H73_09660) - 1932649..1932876 (-) 228 WP_003057262.1 hypothetical protein -
  I6H73_RS09665 (I6H73_09665) - 1932889..1933563 (-) 675 WP_003057298.1 DNA methyltransferase -
  I6H73_RS09670 (I6H73_09670) - 1933560..1933832 (-) 273 WP_003057296.1 hypothetical protein -
  I6H73_RS09675 (I6H73_09675) - 1933829..1934005 (-) 177 WP_003057283.1 hypothetical protein -
  I6H73_RS09680 (I6H73_09680) - 1934019..1934246 (-) 228 WP_003057271.1 hypothetical protein -
  I6H73_RS09685 (I6H73_09685) - 1934246..1935067 (-) 822 WP_003057305.1 ATP-binding protein -
  I6H73_RS09690 (I6H73_09690) - 1935068..1935829 (-) 762 WP_003057307.1 conserved phage C-terminal domain-containing protein -
  I6H73_RS09695 (I6H73_09695) dnaB 1935822..1937162 (-) 1341 WP_003057292.1 replicative DNA helicase -
  I6H73_RS09700 (I6H73_09700) - 1937149..1937337 (-) 189 WP_037587962.1 hypothetical protein -
  I6H73_RS09705 (I6H73_09705) - 1937356..1937616 (-) 261 WP_115261976.1 hypothetical protein -
  I6H73_RS09710 (I6H73_09710) - 1937656..1938024 (-) 369 WP_003057274.1 hypothetical protein -
  I6H73_RS11725 - 1938021..1938155 (-) 135 WP_003057293.1 hypothetical protein -
  I6H73_RS09715 (I6H73_09715) - 1938157..1938360 (-) 204 WP_003057260.1 hypothetical protein -
  I6H73_RS09720 (I6H73_09720) - 1938402..1938566 (-) 165 WP_003057272.1 hypothetical protein -
  I6H73_RS09725 (I6H73_09725) - 1938857..1939204 (+) 348 WP_003055470.1 helix-turn-helix transcriptional regulator -
  I6H73_RS09730 (I6H73_09730) - 1939214..1939594 (+) 381 WP_003055482.1 ImmA/IrrE family metallo-endopeptidase -
  I6H73_RS09735 (I6H73_09735) - 1939606..1940139 (+) 534 WP_003055464.1 hypothetical protein -
  I6H73_RS09740 (I6H73_09740) - 1940266..1941408 (+) 1143 WP_181877634.1 site-specific integrase -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13988.75 Da        Isoelectric Point: 7.8786

>NTDB_id=517200 I6H73_RS09635 WP_003057310.1 1930803..1931171(-) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1016]
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRHFKNQDGQKEADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQHGQRVYVTEVGAESFQILEKRDNTANTNSLADTMPDY

Nucleotide


Download         Length: 369 bp        

>NTDB_id=517200 I6H73_RS09635 WP_003057310.1 1930803..1931171(-) (ssbA) [Streptococcus dysgalactiae strain FDAARGOS_1016]
ATGATTAATAACGTTGTCTTGATTGGCCGCTTAACAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTCATTTTAAAAATCAAGATGGGCAAAAAGAAGCTGATTTTATTAATTGTGTGATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACTAAAAAGGGCCATCTGATTGCGATAACAGGACGCATTCAGACCCGT
AACTATGAGAATCAACATGGTCAACGTGTTTACGTGACAGAAGTGGGTGCCGAAAGTTTTCAAATTTTAGAGAAGCGTGA
TAATACAGCTAATACTAATAGCTTGGCAGATACCATGCCAGACTATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.29

87.705

0.59
  ssb Latilactobacillus sakei subsp. sakei 23K

63.303

89.344

0.566
  ssbA Streptococcus mutans UA159

45.902

100

0.459
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50.909

90.164

0.459
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.83

86.885

0.459
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.273

90.164

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

46.364

90.164

0.418
  ssbB/cilA Streptococcus pneumoniae Rx1

46.364

90.164

0.418
  ssbB/cilA Streptococcus pneumoniae D39

46.364

90.164

0.418
  ssbB/cilA Streptococcus pneumoniae R6

46.364

90.164

0.418
  ssbB/cilA Streptococcus mitis SK321

46.364

90.164

0.418
  ssbB Lactococcus lactis subsp. cremoris KW2

42.735

95.902

0.41