Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   I6H78_RS07350 Genome accession   NZ_CP066059
Coordinates   1518488..1518883 (+) Length   131 a.a.
NCBI ID   WP_000282437.1    Uniprot ID   A0A1X0WLN4
Organism   Streptococcus oralis strain FDAARGOS_1021     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1513488..1523883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H78_RS07320 (I6H78_07320) rpoE 1513660..1514250 (+) 591 WP_000418417.1 DNA-directed RNA polymerase subunit delta -
  I6H78_RS07325 (I6H78_07325) - 1514567..1516174 (+) 1608 WP_198459261.1 CTP synthase -
  I6H78_RS07330 (I6H78_07330) - 1516352..1516651 (+) 300 WP_198459262.1 DUF4651 domain-containing protein -
  I6H78_RS07335 (I6H78_07335) - 1516648..1516965 (+) 318 WP_198459263.1 thioredoxin family protein -
  I6H78_RS07340 (I6H78_07340) ytpR 1516981..1517607 (+) 627 WP_198460240.1 YtpR family tRNA-binding protein -
  I6H78_RS07345 (I6H78_07345) - 1517649..1518410 (+) 762 WP_198459264.1 SDR family NAD(P)-dependent oxidoreductase -
  I6H78_RS07350 (I6H78_07350) ssbB/cilA 1518488..1518883 (+) 396 WP_000282437.1 single-stranded DNA-binding protein Machinery gene
  I6H78_RS07355 (I6H78_07355) groES 1519192..1519476 (+) 285 WP_049489733.1 co-chaperone GroES -
  I6H78_RS07360 (I6H78_07360) groL 1519492..1521114 (+) 1623 WP_198459265.1 chaperonin GroEL -
  I6H78_RS07365 (I6H78_07365) - 1521252..1522019 (+) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  I6H78_RS07370 (I6H78_07370) - 1522089..1522622 (-) 534 WP_000775318.1 DUF402 domain-containing protein -
  I6H78_RS07375 (I6H78_07375) recX 1522711..1523487 (-) 777 WP_198459266.1 recombination regulator RecX -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14861.81 Da        Isoelectric Point: 5.9409

>NTDB_id=516989 I6H78_RS07350 WP_000282437.1 1518488..1518883(+) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_1021]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=516989 I6H78_RS07350 WP_000282437.1 1518488..1518883(+) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_1021]
ATGTATAATAAAGTTATTCTTATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGCGCAACGATCGCTGTGAACCGTCGTTACAAAGACCAGAATGGGGAACGCGAAGCTGACTTTGTCAATCTTGTTCTTT
GGGGAAAATTGGCTGAAACCTTGGCAAGCTACGCAACTAAAGGTAGTCTTATCTCTGTGGATGGAGAACTTCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTTCTTGTGACAGGATTCCAACTTTTGGAAAGTCGTGCCCA
ACGAGCCATGCGTGAAAATAACGCTGGACAGGATTTGGCAGACTTGGTTTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X0WLN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae Rx1

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae D39

97.71

100

0.977
  ssbB/cilA Streptococcus pneumoniae R6

97.71

100

0.977
  ssbB/cilA Streptococcus mitis SK321

97.71

100

0.977
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

48.673

86.26

0.42
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374