Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   I6H72_RS07630 Genome accession   NZ_CP066055
Coordinates   1504720..1505103 (+) Length   127 a.a.
NCBI ID   WP_198457786.1    Uniprot ID   -
Organism   Streptococcus constellatus strain FDAARGOS_1015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1499720..1510103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6H72_RS07600 (I6H72_07600) - 1500046..1501350 (+) 1305 WP_198457782.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  I6H72_RS07605 (I6H72_07605) - 1501530..1502090 (+) 561 WP_006268441.1 folate family ECF transporter S component -
  I6H72_RS07610 (I6H72_07610) pepA 1502212..1503276 (-) 1065 WP_198457783.1 glutamyl aminopeptidase -
  I6H72_RS07615 (I6H72_07615) - 1503396..1503683 (+) 288 WP_198457784.1 DUF4651 domain-containing protein -
  I6H72_RS07620 (I6H72_07620) - 1503680..1503997 (+) 318 WP_106383916.1 thioredoxin family protein -
  I6H72_RS07625 (I6H72_07625) ytpR 1504014..1504640 (+) 627 WP_198457785.1 YtpR family tRNA-binding protein -
  I6H72_RS07630 (I6H72_07630) ssbB/cilA 1504720..1505103 (+) 384 WP_198457786.1 single-stranded DNA-binding protein Machinery gene
  I6H72_RS07635 (I6H72_07635) - 1505400..1506386 (+) 987 WP_198457787.1 sugar ABC transporter substrate-binding protein -
  I6H72_RS07640 (I6H72_07640) - 1506386..1507699 (+) 1314 Protein_1486 sensor histidine kinase -
  I6H72_RS07645 (I6H72_07645) - 1507692..1508375 (+) 684 WP_198457788.1 response regulator transcription factor -
  I6H72_RS07650 (I6H72_07650) - 1508372..1509658 (+) 1287 WP_198457789.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14227.15 Da        Isoelectric Point: 7.9548

>NTDB_id=516879 I6H72_RS07630 WP_198457786.1 1504720..1505103(+) (ssbB/cilA) [Streptococcus constellatus strain FDAARGOS_1015]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYASKGSLISLDGELRTR
RYEKDNVTEVLCNGFQLLESRAQRALRENNAGADLADLLLEEEKLPF

Nucleotide


Download         Length: 384 bp        

>NTDB_id=516879 I6H72_RS07630 WP_198457786.1 1504720..1505103(+) (ssbB/cilA) [Streptococcus constellatus strain FDAARGOS_1015]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCAGAGTTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCTGTCAATCGTCGCTACAAAGGACAAAATGGTGAACGAGAAGCAGACTTCGTCAATGTCGTTGTTT
GGGGCAAGTTAGCTGAAACCTTAGCAAGTTATGCAAGTAAAGGCAGCCTGATTTCGCTAGACGGCGAACTTCGTACTCGT
CGTTATGAGAAGGACAATGTTACAGAAGTACTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCACAGCGAGCTCTTCG
TGAAAATAATGCAGGTGCAGACTTGGCAGATTTGCTTCTGGAAGAAGAGAAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

81.679

100

0.843
  ssbB/cilA Streptococcus mitis NCTC 12261

80.916

100

0.835
  ssbB/cilA Streptococcus pneumoniae Rx1

80.916

100

0.835
  ssbB/cilA Streptococcus pneumoniae D39

80.916

100

0.835
  ssbB/cilA Streptococcus pneumoniae R6

80.916

100

0.835
  ssbB/cilA Streptococcus mitis SK321

80.916

100

0.835
  ssbA Streptococcus mutans UA159

76.336

100

0.787
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.74
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

88.189

0.528
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

83.465

0.409
  ssb Latilactobacillus sakei subsp. sakei 23K

42.373

92.913

0.394
  ssbB Bacillus subtilis subsp. subtilis str. 168

42.593

85.039

0.362