Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6I21_RS08470 | Genome accession | NZ_CP065984 |
| Coordinates | 1655325..1655750 (+) | Length | 141 a.a. |
| NCBI ID | WP_014570750.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain FDAARGOS_1064 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1650325..1660750
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6I21_RS08415 (I6I21_08415) | - | 1650907..1651116 (+) | 210 | WP_014570761.1 | hypothetical protein | - |
| I6I21_RS08420 (I6I21_08420) | - | 1651106..1651363 (-) | 258 | WP_014570760.1 | hypothetical protein | - |
| I6I21_RS08425 (I6I21_08425) | - | 1651469..1651708 (+) | 240 | WP_014570759.1 | helix-turn-helix transcriptional regulator | - |
| I6I21_RS08430 (I6I21_08430) | - | 1651721..1652488 (+) | 768 | WP_014570758.1 | phage repressor protein/antirepressor Ant | - |
| I6I21_RS08435 (I6I21_08435) | - | 1652501..1652770 (+) | 270 | WP_014570757.1 | hypothetical protein | - |
| I6I21_RS08440 (I6I21_08440) | - | 1652865..1653059 (+) | 195 | WP_014570756.1 | hypothetical protein | - |
| I6I21_RS08445 (I6I21_08445) | - | 1653089..1653367 (-) | 279 | WP_014570755.1 | DUF3892 domain-containing protein | - |
| I6I21_RS08450 (I6I21_08450) | - | 1653518..1653718 (+) | 201 | WP_014570754.1 | helix-turn-helix domain-containing protein | - |
| I6I21_RS08455 (I6I21_08455) | - | 1653720..1653947 (+) | 228 | WP_014570753.1 | hypothetical protein | - |
| I6I21_RS08460 (I6I21_08460) | - | 1654047..1654565 (+) | 519 | WP_014570752.1 | host-nuclease inhibitor Gam family protein | - |
| I6I21_RS08465 (I6I21_08465) | - | 1654574..1655332 (+) | 759 | WP_014570751.1 | Rad52/Rad22 family DNA repair protein | - |
| I6I21_RS08470 (I6I21_08470) | ssb | 1655325..1655750 (+) | 426 | WP_014570750.1 | single-stranded DNA-binding protein | Machinery gene |
| I6I21_RS08475 (I6I21_08475) | - | 1655875..1656681 (+) | 807 | WP_014570749.1 | phage replisome organizer N-terminal domain-containing protein | - |
| I6I21_RS08480 (I6I21_08480) | - | 1656691..1657608 (+) | 918 | WP_014570748.1 | ATP-binding protein | - |
| I6I21_RS08485 (I6I21_08485) | - | 1657589..1657753 (+) | 165 | WP_014570747.1 | hypothetical protein | - |
| I6I21_RS08490 (I6I21_08490) | - | 1657743..1658132 (+) | 390 | WP_014570746.1 | RusA family crossover junction endodeoxyribonuclease | - |
| I6I21_RS08495 (I6I21_08495) | - | 1658135..1658329 (+) | 195 | WP_014570745.1 | hypothetical protein | - |
| I6I21_RS08500 (I6I21_08500) | - | 1658322..1658561 (+) | 240 | WP_014570744.1 | DUF1031 family protein | - |
| I6I21_RS08505 (I6I21_08505) | - | 1659070..1659270 (+) | 201 | WP_014570743.1 | DUF1125 domain-containing protein | - |
| I6I21_RS08510 (I6I21_08510) | - | 1659267..1659446 (+) | 180 | WP_043991166.1 | hypothetical protein | - |
| I6I21_RS08515 (I6I21_08515) | - | 1659439..1660113 (+) | 675 | WP_014570539.1 | DUF1642 domain-containing protein | - |
| I6I21_RS08520 (I6I21_08520) | - | 1660110..1660529 (+) | 420 | WP_003129863.1 | dUTP diphosphatase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15742.47 Da Isoelectric Point: 5.1972
>NTDB_id=515983 I6I21_RS08470 WP_014570750.1 1655325..1655750(+) (ssb) [Lactococcus lactis strain FDAARGOS_1064]
MINNVTLVGRITKEPELRYTPQNKAVASFTLAVNRQFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGNPASKPQNNDSFGSDPMEISDDDLPF
MINNVTLVGRITKEPELRYTPQNKAVASFTLAVNRQFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVIGNIQTR
NYENQQGQRVYITEVVASNFQVLEKSNQANGERVGNPASKPQNNDSFGSDPMEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=515983 I6I21_RS08470 WP_014570750.1 1655325..1655750(+) (ssb) [Lactococcus lactis strain FDAARGOS_1064]
ATGATTAACAATGTCACTCTAGTAGGAAGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTCATCAATTGTGTTATCT
GGGGTAAATCAGCCGAAAACTTAGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGG
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
ATGATTAACAATGTCACTCTAGTAGGAAGAATCACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
TTCATTTACTCTTGCAGTTAATCGTCAATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTCATCAATTGTGTTATCT
GGGGTAAATCAGCCGAAAACTTAGCCAATTGGACTCATAAAGGTCAATTAATTGGAGTTATTGGGAATATCCAAACTCGG
AACTATGAGAACCAACAAGGGCAACGTGTTTATATTACGGAGGTTGTCGCAAGTAATTTCCAAGTACTAGAAAAAAGTAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTTCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.652 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.744 |
100 |
0.631 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.262 |
100 |
0.433 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.553 |
100 |
0.426 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
57.692 |
73.759 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
39.716 |
100 |
0.397 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
50.485 |
73.05 |
0.369 |