Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KV381_RS27205 Genome accession   NZ_CP079114
Coordinates   6204262..6205248 (+) Length   328 a.a.
NCBI ID   WP_030078892.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6199262..6210248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS27185 (KV381_27185) - 6199430..6201109 (+) 1680 WP_030078900.1 ABC transporter substrate-binding protein -
  KV381_RS27190 (KV381_27190) - 6201147..6202277 (+) 1131 WP_256995161.1 ABC transporter ATP-binding protein -
  KV381_RS27195 (KV381_27195) - 6202274..6203254 (+) 981 WP_030078896.1 ABC transporter permease -
  KV381_RS27200 (KV381_27200) - 6203261..6204265 (+) 1005 WP_030078894.1 ABC transporter permease -
  KV381_RS27205 (KV381_27205) amiE 6204262..6205248 (+) 987 WP_030078892.1 ABC transporter ATP-binding protein Regulator
  KV381_RS27210 (KV381_27210) - 6205281..6206696 (+) 1416 WP_218786605.1 GH1 family beta-glucosidase -
  KV381_RS27215 (KV381_27215) - 6206762..6209863 (+) 3102 WP_218786606.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 35717.07 Da        Isoelectric Point: 6.8173

>NTDB_id=514220 KV381_RS27205 WP_030078892.1 6204262..6205248(+) (amiE) [Streptomyces sp. WY228]
MSAEPVLTISGLNVDYGTDASAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHRPGGDR
VDILSLAPDQLRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLAAHRPELKKRQRTERAQELLELVGISADRLAAYPHQ
LSGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILRRLVQLREQLNFSVVFITHDISLLIEFSDRIAIMYGGRIV
EQAGAAEIYRDPRHPYSDGLLHSFPALHGPRRELTGIPGSPPHLSAMPTGCAFHPRCGKAFAPCAAEVPPLAPPTGEPGR
EVACHLHV

Nucleotide


Download         Length: 987 bp        

>NTDB_id=514220 KV381_RS27205 WP_030078892.1 6204262..6205248(+) (amiE) [Streptomyces sp. WY228]
ATGAGCGCCGAGCCGGTCCTGACCATCAGCGGACTGAACGTCGACTACGGCACCGACGCGAGCGCCGTCCACGCCCTGCG
CGACATCGACCTCACCCTCCACCGCGGCGAAGTCCTCGGCCTGGCAGGGGAGTCGGGCTCGGGCAAGTCGACCCTCGCCT
ACGCGGTGACCCGGCTGCTGTCACCGCCCGGCGTCATCACCGGGGGAGAGGTCCACTACCACCGGCCCGGCGGCGACCGG
GTCGACATCCTCTCCCTCGCACCGGACCAGCTGCGCGCCTTCCGCTGGCAGGAGCTGTCCATCGTCTTCCAGGGGGCGAT
GAACTCCCTCAACCCGGTGCACACCGTCCACAGTCAGCTCACCGACGTACTCGCCGCCCACCGCCCCGAACTGAAGAAGC
GCCAACGCACCGAGCGAGCACAGGAGTTGCTGGAGCTCGTCGGCATCAGCGCCGACCGGCTCGCCGCCTACCCGCACCAG
CTCTCCGGCGGCATGCGACAGCGCGTGATGATCGCCATGGCGCTCGCCCTGGAACCCGAGATCGTCATCATGGACGAGCC
GACCACCGCGCTCGACGTGGTGATGCAGCGACAGATCCTGCGACGGCTCGTCCAGTTGAGGGAACAGCTCAACTTCTCGG
TCGTGTTCATCACCCACGACATCTCGCTCCTGATCGAATTCTCGGACCGGATCGCGATCATGTACGGAGGCCGCATCGTG
GAGCAGGCGGGCGCGGCGGAGATCTACCGCGACCCCCGCCACCCCTACAGCGACGGGCTCCTGCACTCCTTCCCCGCGCT
CCACGGCCCCCGCCGCGAACTGACCGGCATCCCCGGCTCCCCGCCCCACCTCTCCGCGATGCCCACCGGCTGCGCCTTCC
ACCCGCGCTGCGGCAAGGCCTTCGCCCCGTGCGCCGCCGAGGTCCCGCCGCTGGCCCCGCCGACCGGCGAACCCGGCCGC
GAGGTCGCCTGCCATCTGCACGTCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-188)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(240-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

39.414

93.598

0.369
  amiE Streptococcus thermophilus LMD-9

39.414

93.598

0.369
  amiE Streptococcus salivarius strain HSISS4

39.286

93.902

0.369
  oppD Streptococcus mutans UA159

38.535

95.732

0.369