Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I6G54_RS16605 Genome accession   NZ_CP065743
Coordinates   2977406..2977741 (+) Length   111 a.a.
NCBI ID   WP_033692028.1    Uniprot ID   -
Organism   Bacillus tropicus strain FDAARGOS_897     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2972406..2982741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G54_RS16580 (I6G54_16580) - 2972669..2973430 (-) 762 WP_002194325.1 hypothetical protein -
  I6G54_RS16585 (I6G54_16585) - 2973540..2974187 (+) 648 WP_002194327.1 HD domain-containing protein -
  I6G54_RS16590 (I6G54_16590) - 2974184..2976079 (+) 1896 WP_033692023.1 ABC-F family ATP-binding cassette domain-containing protein -
  I6G54_RS16595 (I6G54_16595) - 2976155..2976886 (+) 732 WP_001260642.1 Bax inhibitor-1/YccA family membrane protein -
  I6G54_RS16600 (I6G54_16600) - 2976992..2977246 (+) 255 WP_033692025.1 DUF4318 domain-containing protein -
  I6G54_RS16605 (I6G54_16605) ssbA 2977406..2977741 (+) 336 WP_033692028.1 single-stranded DNA-binding protein Machinery gene
  I6G54_RS16610 (I6G54_16610) - 2977909..2979036 (+) 1128 WP_033692030.1 conserved virulence factor C family protein -
  I6G54_RS16615 (I6G54_16615) - 2979040..2979423 (+) 384 WP_033692031.1 thiol-disulfide oxidoreductase DCC family protein -
  I6G54_RS16620 (I6G54_16620) - 2979507..2979941 (+) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  I6G54_RS16625 (I6G54_16625) - 2979991..2980767 (+) 777 WP_001980117.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12658.45 Da        Isoelectric Point: 9.4474

>NTDB_id=513841 I6G54_RS16605 WP_033692028.1 2977406..2977741(+) (ssbA) [Bacillus tropicus strain FDAARGOS_897]
MMNRVVLIGRLTKAPELYYTKQGAAYARICIAVNRGFRNSLGEQQVDFINCVVWRKSAENVTEYCTKGSLVGITGRIQTS
NYDDEQGKRVYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=513841 I6G54_RS16605 WP_033692028.1 2977406..2977741(+) (ssbA) [Bacillus tropicus strain FDAARGOS_897]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGCGCCAGAATTATACTACACAAAACAAGGCGCCGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAGGGCTCTCTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AACTACGATGATGAACAAGGCAAGAGAGTATATAGAACGGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.679

100

0.532
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.545

99.099

0.441
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae R6

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis SK321

40.909

99.099

0.405
  ssbA Streptococcus mutans UA159

40

99.099

0.396