Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | I6G23_RS07140 | Genome accession | NZ_CP065735 |
| Coordinates | 1155959..1156384 (+) | Length | 141 a.a. |
| NCBI ID | WP_010905962.1 | Uniprot ID | - |
| Organism | Lactococcus lactis strain FDAARGOS_866 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1147655..1187607 | 1155959..1156384 | within | 0 |
Gene organization within MGE regions
Location: 1147655..1187607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6G23_RS07065 (I6G23_07065) | - | 1147655..1147990 (+) | 336 | WP_003130477.1 | putative DNA-binding protein | - |
| I6G23_RS07075 (I6G23_07075) | - | 1148695..1149774 (-) | 1080 | WP_010905971.1 | tyrosine-type recombinase/integrase | - |
| I6G23_RS07080 (I6G23_07080) | - | 1149895..1150950 (-) | 1056 | WP_042748038.1 | type I restriction endonuclease | - |
| I6G23_RS07085 (I6G23_07085) | - | 1151029..1151229 (-) | 201 | WP_153984532.1 | hypothetical protein | - |
| I6G23_RS07090 (I6G23_07090) | - | 1151241..1151804 (-) | 564 | WP_153984533.1 | hypothetical protein | - |
| I6G23_RS07095 (I6G23_07095) | - | 1151833..1152180 (-) | 348 | WP_011676016.1 | XRE family transcriptional regulator | - |
| I6G23_RS07100 (I6G23_07100) | - | 1152471..1152701 (+) | 231 | WP_011676017.1 | hypothetical protein | - |
| I6G23_RS07105 (I6G23_07105) | - | 1152716..1153459 (+) | 744 | WP_031298611.1 | ORF6C domain-containing protein | - |
| I6G23_RS07110 (I6G23_07110) | - | 1153472..1153762 (+) | 291 | WP_010905965.1 | hypothetical protein | - |
| I6G23_RS07115 (I6G23_07115) | - | 1153905..1154099 (+) | 195 | WP_010905685.1 | hypothetical protein | - |
| I6G23_RS07120 (I6G23_07120) | - | 1154096..1154371 (-) | 276 | WP_010905686.1 | hypothetical protein | - |
| I6G23_RS07125 (I6G23_07125) | - | 1154474..1154689 (+) | 216 | WP_010905687.1 | DUF1408 domain-containing protein | - |
| I6G23_RS07130 (I6G23_07130) | - | 1154804..1155199 (+) | 396 | WP_010905964.1 | hypothetical protein | - |
| I6G23_RS07135 (I6G23_07135) | - | 1155208..1155966 (+) | 759 | WP_010905963.1 | Rad52/Rad22 family DNA repair protein | - |
| I6G23_RS07140 (I6G23_07140) | ssb | 1155959..1156384 (+) | 426 | WP_010905962.1 | single-stranded DNA-binding protein | Machinery gene |
| I6G23_RS07145 (I6G23_07145) | - | 1156512..1157351 (+) | 840 | WP_010905961.1 | phage replisome organizer protein | - |
| I6G23_RS07150 (I6G23_07150) | - | 1157370..1158245 (+) | 876 | WP_228762921.1 | ATP-binding protein | - |
| I6G23_RS07155 (I6G23_07155) | - | 1158242..1158406 (+) | 165 | WP_010905352.1 | hypothetical protein | - |
| I6G23_RS07160 (I6G23_07160) | - | 1158396..1158806 (+) | 411 | WP_015966782.1 | hypothetical protein | - |
| I6G23_RS07165 (I6G23_07165) | - | 1158914..1159078 (+) | 165 | WP_010905354.1 | hypothetical protein | - |
| I6G23_RS07170 (I6G23_07170) | - | 1159053..1159415 (+) | 363 | WP_010905355.1 | DUF658 family protein | - |
| I6G23_RS07175 (I6G23_07175) | - | 1159422..1159565 (-) | 144 | WP_153916742.1 | hypothetical protein | - |
| I6G23_RS07180 (I6G23_07180) | - | 1159609..1159815 (+) | 207 | WP_010905356.1 | DUF1125 domain-containing protein | - |
| I6G23_RS07185 (I6G23_07185) | - | 1159808..1160080 (+) | 273 | WP_010905357.1 | hypothetical protein | - |
| I6G23_RS07190 (I6G23_07190) | - | 1160077..1160625 (+) | 549 | WP_197942577.1 | DUF1642 domain-containing protein | - |
| I6G23_RS07195 (I6G23_07195) | - | 1160622..1160945 (+) | 324 | WP_153984572.1 | hypothetical protein | - |
| I6G23_RS07200 (I6G23_07200) | - | 1160942..1161361 (+) | 420 | WP_153984571.1 | dUTP diphosphatase | - |
| I6G23_RS13415 | - | 1161364..1161927 (+) | 564 | WP_228777669.1 | hypothetical protein | - |
| I6G23_RS07215 (I6G23_07215) | - | 1161924..1162217 (+) | 294 | WP_153984570.1 | hypothetical protein | - |
| I6G23_RS07220 (I6G23_07220) | - | 1162239..1163033 (+) | 795 | WP_153984569.1 | DNA methyltransferase | - |
| I6G23_RS07225 (I6G23_07225) | - | 1163090..1163305 (+) | 216 | WP_058213413.1 | hypothetical protein | - |
| I6G23_RS07230 (I6G23_07230) | - | 1163298..1163438 (+) | 141 | WP_415752204.1 | DUF1660 family phage protein | - |
| I6G23_RS07235 (I6G23_07235) | - | 1163438..1163599 (+) | 162 | WP_153984568.1 | hypothetical protein | - |
| I6G23_RS07240 (I6G23_07240) | - | 1163635..1163850 (+) | 216 | WP_153915072.1 | hypothetical protein | - |
| I6G23_RS07245 (I6G23_07245) | - | 1164374..1164796 (+) | 423 | WP_014570802.1 | RinA family protein | - |
| I6G23_RS07255 (I6G23_07255) | - | 1165073..1165489 (+) | 417 | WP_003131930.1 | hypothetical protein | - |
| I6G23_RS07260 (I6G23_07260) | terL | 1165482..1166870 (+) | 1389 | WP_153984566.1 | phage terminase large subunit | - |
| I6G23_RS07265 (I6G23_07265) | - | 1166871..1168232 (+) | 1362 | WP_153984565.1 | phage portal protein | - |
| I6G23_RS07270 (I6G23_07270) | - | 1168236..1169276 (+) | 1041 | WP_153984564.1 | minor capsid protein | - |
| I6G23_RS07275 (I6G23_07275) | - | 1169322..1169654 (+) | 333 | WP_081144344.1 | YjcQ family protein | - |
| I6G23_RS07280 (I6G23_07280) | - | 1169713..1169961 (+) | 249 | WP_058225951.1 | DUF6275 family protein | - |
| I6G23_RS07285 (I6G23_07285) | - | 1170086..1170748 (+) | 663 | WP_153984563.1 | capsid assembly scaffolding protein Gp46 family protein | - |
| I6G23_RS07290 (I6G23_07290) | - | 1170750..1171571 (+) | 822 | WP_042748441.1 | N4-gp56 family major capsid protein | - |
| I6G23_RS07295 (I6G23_07295) | - | 1171571..1171771 (+) | 201 | WP_011676051.1 | HeH/LEM domain-containing protein | - |
| I6G23_RS07300 (I6G23_07300) | - | 1171755..1172087 (+) | 333 | WP_021212689.1 | phage head-tail connector protein | - |
| I6G23_RS07305 (I6G23_07305) | - | 1172084..1172395 (+) | 312 | WP_081144341.1 | hypothetical protein | - |
| I6G23_RS07310 (I6G23_07310) | - | 1172392..1172718 (+) | 327 | WP_153984562.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| I6G23_RS07315 (I6G23_07315) | - | 1172715..1173104 (+) | 390 | WP_153984561.1 | phage capsid protein | - |
| I6G23_RS07320 (I6G23_07320) | - | 1173115..1173612 (+) | 498 | WP_015966828.1 | phage major tail protein, TP901-1 family | - |
| I6G23_RS07325 (I6G23_07325) | - | 1173728..1174078 (+) | 351 | WP_032398563.1 | tail assembly chaperone | - |
| I6G23_RS07330 (I6G23_07330) | - | 1174162..1174431 (+) | 270 | WP_032947406.1 | hypothetical protein | - |
| I6G23_RS07335 (I6G23_07335) | - | 1174447..1176660 (+) | 2214 | WP_153984560.1 | tape measure protein | - |
| I6G23_RS07340 (I6G23_07340) | - | 1176670..1177431 (+) | 762 | WP_153984559.1 | distal tail protein Dit | - |
| I6G23_RS07345 (I6G23_07345) | - | 1177431..1180187 (+) | 2757 | WP_332299513.1 | phage tail spike protein | - |
| I6G23_RS07350 (I6G23_07350) | - | 1180206..1182557 (+) | 2352 | WP_153984554.1 | SGNH/GDSL hydrolase family protein | - |
| I6G23_RS07355 (I6G23_07355) | - | 1182769..1182993 (+) | 225 | WP_010905920.1 | hemolysin XhlA family protein | - |
| I6G23_RS07360 (I6G23_07360) | - | 1183047..1184567 (+) | 1521 | WP_228777668.1 | phage baseplate upper protein | - |
| I6G23_RS07365 (I6G23_07365) | - | 1184593..1184892 (+) | 300 | WP_014570565.1 | phage holin | - |
| I6G23_RS07370 (I6G23_07370) | - | 1184892..1185671 (+) | 780 | WP_153984551.1 | peptidoglycan amidohydrolase family protein | - |
| I6G23_RS07380 (I6G23_07380) | - | 1187077..1187607 (+) | 531 | WP_010905913.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15701.41 Da Isoelectric Point: 5.1972
>NTDB_id=513684 I6G23_RS07140 WP_010905962.1 1155959..1156384(+) (ssb) [Lactococcus lactis strain FDAARGOS_866]
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYVTEVIANNFQVLEKSNQANGERVSNPAAKPQNNDSFGSDPMEISDDDLPF
MINNVTLVGRITKEPELRYTPQNKAVATFTLAVNRAFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVTGSIQTR
NYENQQGQRVYVTEVIANNFQVLEKSNQANGERVSNPAAKPQNNDSFGSDPMEISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=513684 I6G23_RS07140 WP_010905962.1 1155959..1156384(+) (ssb) [Lactococcus lactis strain FDAARGOS_866]
ATGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATCGGAGTTACTGGTAGTATTCAAACTCGA
AACTACGAGAACCAACAAGGTCAACGAGTTTATGTAACAGAAGTCATTGCAAACAATTTCCAAGTACTTGAAAAAAGCAA
TCAAGCAAATGGTGAACGAGTTAGTAATCCAGCTGCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
ATGATTAACAATGTCACTCTAGTAGGGCGAATTACTAAAGAACCTGAACTTAGATATACACCACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCCGAAAACTTGGCCAATTGGACTCATAAAGGTCAATTAATCGGAGTTACTGGTAGTATTCAAACTCGA
AACTACGAGAACCAACAAGGTCAACGAGTTTATGTAACAGAAGTCATTGCAAACAATTTCCAAGTACTTGAAAAAAGCAA
TCAAGCAAATGGTGAACGAGTTAGTAATCCAGCTGCAAAACCACAAAATAATGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.652 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.907 |
100 |
0.645 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.681 |
100 |
0.447 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.681 |
100 |
0.447 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.681 |
100 |
0.447 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.972 |
100 |
0.44 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.972 |
100 |
0.44 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.972 |
100 |
0.44 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.972 |
100 |
0.44 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.654 |
73.759 |
0.433 |
| ssbA | Streptococcus mutans UA159 |
40.426 |
100 |
0.404 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
49.515 |
73.05 |
0.362 |