Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   I6G42_RS09840 Genome accession   NZ_CP065707
Coordinates   1996899..1997294 (-) Length   131 a.a.
NCBI ID   WP_038804476.1    Uniprot ID   A0A7T3DY75
Organism   Streptococcus oralis strain FDAARGOS_885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1991899..2002294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G42_RS09815 (I6G42_09815) recX 1992458..1993234 (+) 777 WP_038804472.1 recombination regulator RecX -
  I6G42_RS09820 (I6G42_09820) - 1993323..1993856 (+) 534 WP_038804473.1 DUF402 domain-containing protein -
  I6G42_RS09825 (I6G42_09825) - 1993928..1994695 (-) 768 WP_000567567.1 epoxyqueuosine reductase QueH -
  I6G42_RS09830 (I6G42_09830) groL 1994820..1996442 (-) 1623 WP_038804474.1 chaperonin GroEL -
  I6G42_RS09835 (I6G42_09835) groES 1996458..1996742 (-) 285 WP_038804475.1 co-chaperone GroES -
  I6G42_RS09840 (I6G42_09840) ssbB/cilA 1996899..1997294 (-) 396 WP_038804476.1 single-stranded DNA-binding protein Machinery gene
  I6G42_RS09845 (I6G42_09845) - 1997371..1998132 (-) 762 WP_038804477.1 SDR family NAD(P)-dependent oxidoreductase -
  I6G42_RS09850 (I6G42_09850) ytpR 1998175..1998801 (-) 627 WP_038804479.1 YtpR family tRNA-binding protein -
  I6G42_RS09855 (I6G42_09855) - 1998817..1999134 (-) 318 WP_038804480.1 thioredoxin family protein -
  I6G42_RS09860 (I6G42_09860) - 1999131..1999430 (-) 300 WP_038804481.1 DUF4651 domain-containing protein -
  I6G42_RS09865 (I6G42_09865) - 1999606..2001213 (-) 1608 WP_038804482.1 CTP synthase -
  I6G42_RS09870 (I6G42_09870) rpoE 2001545..2002135 (-) 591 WP_000418420.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14851.79 Da        Isoelectric Point: 5.9409

>NTDB_id=513322 I6G42_RS09840 WP_038804476.1 1996899..1997294(-) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_885]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNLVLWGKLAETMASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=513322 I6G42_RS09840 WP_038804476.1 1996899..1997294(-) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_885]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTGGC
TCGCGCAACTATTGCTGTGAACCGTCGTTACAAAGACCAAAATGGGGAACGCGAAGCTGACTTTGTCAATCTGGTTCTTT
GGGGAAAATTGGCTGAAACCATGGCAAGTTACGCGACCAAAGGAAGCCTCATTTCAGTAGATGGGGAACTACGTACCCGT
CGCTTCGAGAAAAATGGCCAGATGAACTACGTGACTGAAGTTCTTGCCACAGGATTCCAACTTTTGGAAAGCCGCGCCCA
ACGGGCTATGCGTGAAAATAACGCTGGACAGGATTTGGCCGATTTGGTCTTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T3DY75

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.947

100

0.969
  ssbB/cilA Streptococcus mitis NCTC 12261

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae Rx1

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae D39

96.183

100

0.962
  ssbB/cilA Streptococcus pneumoniae R6

96.183

100

0.962
  ssbB/cilA Streptococcus mitis SK321

96.183

100

0.962
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

60.714

85.496

0.519
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbB Bacillus subtilis subsp. subtilis str. 168

46.296

82.443

0.382