Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   I6G43_RS08170 Genome accession   NZ_CP065706
Coordinates   1702516..1702911 (-) Length   131 a.a.
NCBI ID   WP_000282444.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_886     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1697516..1707911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G43_RS08145 (I6G43_08145) recX 1698090..1698866 (+) 777 WP_038805762.1 recombination regulator RecX -
  I6G43_RS08150 (I6G43_08150) - 1698955..1699488 (+) 534 WP_000775318.1 DUF402 domain-containing protein -
  I6G43_RS08155 (I6G43_08155) - 1699558..1700325 (-) 768 WP_000567566.1 epoxyqueuosine reductase QueH -
  I6G43_RS08160 (I6G43_08160) groL 1700438..1702060 (-) 1623 WP_000031555.1 chaperonin GroEL -
  I6G43_RS08165 (I6G43_08165) groES 1702076..1702360 (-) 285 WP_000917316.1 co-chaperone GroES -
  I6G43_RS08170 (I6G43_08170) ssbB/cilA 1702516..1702911 (-) 396 WP_000282444.1 single-stranded DNA-binding protein Machinery gene
  I6G43_RS08175 (I6G43_08175) - 1702988..1703749 (-) 762 WP_038805763.1 SDR family NAD(P)-dependent oxidoreductase -
  I6G43_RS08180 (I6G43_08180) ytpR 1703791..1704417 (-) 627 WP_038805764.1 YtpR family tRNA-binding protein -
  I6G43_RS08185 (I6G43_08185) - 1704433..1704750 (-) 318 WP_038805766.1 thioredoxin family protein -
  I6G43_RS08190 (I6G43_08190) - 1704747..1705046 (-) 300 WP_038805768.1 DUF4651 domain-containing protein -
  I6G43_RS08195 (I6G43_08195) - 1705143..1706750 (-) 1608 WP_000105254.1 CTP synthase -
  I6G43_RS08200 (I6G43_08200) rpoE 1707081..1707671 (-) 591 WP_000418413.1 DNA-directed RNA polymerase subunit delta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14779.72 Da        Isoelectric Point: 7.0177

>NTDB_id=513235 I6G43_RS08170 WP_000282444.1 1702516..1702911(-) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_886]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGERGADFVNLVLWGKLAETMASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLATGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=513235 I6G43_RS08170 WP_000282444.1 1702516..1702911(-) (ssbB/cilA) [Streptococcus oralis strain FDAARGOS_886]
ATGTATAATAAAGTTATCTTGATCGGGCGTTTGACGTCTACACCAGAACTGCACAAAACCAACAATGACAAGTCAGTGGC
GCGCGCAACTATTGCTGTGAACCGTCGTTACAAAGACCAAAATGGCGAACGTGGAGCTGATTTTGTCAATCTGGTTCTTT
GGGGAAAATTGGCTGAAACCATGGCAAGTTACGCAACTAAAGGCAGTCTTATTTCTGTTGATGGGGAGTTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAGATGAACTATGTGACTGAAGTTCTCGCCACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGACAGGATTTGGCAGACCTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

96.183

100

0.962
  ssbB/cilA Streptococcus mitis NCTC 12261

95.42

100

0.954
  ssbB/cilA Streptococcus pneumoniae Rx1

95.42

100

0.954
  ssbB/cilA Streptococcus pneumoniae D39

95.42

100

0.954
  ssbB/cilA Streptococcus pneumoniae R6

95.42

100

0.954
  ssbB/cilA Streptococcus mitis SK321

95.42

100

0.954
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbB Bacillus subtilis subsp. subtilis str. 168

45.37

82.443

0.374