Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IRB79_RS26645 Genome accession   NZ_CP065511
Coordinates   5332682..5333050 (-) Length   122 a.a.
NCBI ID   WP_243506143.1    Uniprot ID   -
Organism   Cytobacillus oceanisediminis strain N497-ZHONG     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5327682..5338050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB79_RS26630 (IRB79_26560) - 5329040..5331859 (+) 2820 WP_243506138.1 DEAD/DEAH box helicase -
  IRB79_RS26635 (IRB79_26565) - 5331867..5332253 (-) 387 WP_243506142.1 hypothetical protein -
  IRB79_RS26640 (IRB79_26570) - 5332494..5332676 (-) 183 WP_243509678.1 hypothetical protein -
  IRB79_RS26645 (IRB79_26575) ssbB 5332682..5333050 (-) 369 WP_243506143.1 single-stranded DNA-binding protein Machinery gene
  IRB79_RS26650 (IRB79_26580) - 5333318..5333776 (+) 459 WP_243506144.1 YwpF-like family protein -
  IRB79_RS26655 (IRB79_26585) - 5333825..5334118 (-) 294 WP_243506145.1 hypothetical protein -
  IRB79_RS26660 (IRB79_26590) fabZ 5334256..5334684 (-) 429 WP_009332168.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IRB79_RS26665 (IRB79_26595) - 5334871..5335140 (-) 270 WP_243506146.1 DNA-directed RNA polymerase subunit beta -
  IRB79_RS26670 (IRB79_26600) - 5335158..5335985 (-) 828 WP_243506147.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 14170.20 Da        Isoelectric Point: 9.7599

>NTDB_id=511513 IRB79_RS26645 WP_243506143.1 5332682..5333050(-) (ssbB) [Cytobacillus oceanisediminis strain N497-ZHONG]
MINQVTLVGRLTRDPELKRTQEGIPVTNVTLAVNRQYRNQKGEIDADFVQCTLWKKSAENTSQYCRKGTLIGITGRIQTR
HYDNQEKKRIYVTEVVAESVRFLDRKKTEEIPVTVTKEELPF

Nucleotide


Download         Length: 369 bp        

>NTDB_id=511513 IRB79_RS26645 WP_243506143.1 5332682..5333050(-) (ssbB) [Cytobacillus oceanisediminis strain N497-ZHONG]
ATGATTAATCAAGTGACCCTGGTTGGAAGACTGACAAGGGATCCTGAGCTGAAACGGACACAGGAAGGAATTCCGGTGAC
AAATGTGACGCTGGCAGTAAACCGCCAATACCGCAACCAGAAGGGTGAAATCGATGCGGACTTTGTGCAGTGCACTTTAT
GGAAAAAATCAGCGGAAAATACATCGCAATATTGCCGGAAAGGAACGCTGATCGGGATAACCGGGCGAATTCAGACGAGG
CATTATGATAATCAGGAAAAGAAACGCATTTATGTAACAGAGGTGGTAGCGGAATCGGTACGCTTTCTTGACCGGAAAAA
GACAGAGGAAATCCCGGTGACCGTGACCAAGGAGGAATTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

60

90.164

0.541
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.206

87.705

0.475
  ssb Latilactobacillus sakei subsp. sakei 23K

50

90.164

0.451
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.394

100

0.426
  ssbA Streptococcus mutans UA159

37.879

100

0.41
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.121

100

0.402
  ssbB/cilA Streptococcus mitis NCTC 12261

37.121

100

0.402
  ssbB/cilA Streptococcus pneumoniae Rx1

36.364

100

0.393
  ssbB/cilA Streptococcus pneumoniae D39

36.364

100

0.393
  ssbB/cilA Streptococcus pneumoniae R6

36.364

100

0.393
  ssbB/cilA Streptococcus mitis SK321

36.364

100

0.393
  ssbB Lactococcus lactis subsp. cremoris KW2

42.056

87.705

0.369