Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SIR_RS14265 Genome accession   NC_022246
Coordinates   906784..908532 (-) Length   582 a.a.
NCBI ID   WP_021002790.1    Uniprot ID   T1ZFL0
Organism   Streptococcus intermedius B196     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 901784..913532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SIR_RS14250 (SIR_0885) - 901839..904016 (+) 2178 WP_021002788.1 ABC transporter substrate-binding protein/permease -
  SIR_RS14255 (SIR_0886) - 904016..904756 (+) 741 WP_003072905.1 amino acid ABC transporter ATP-binding protein -
  SIR_RS14260 (SIR_0887) - 905131..906666 (+) 1536 WP_021002789.1 ATP-binding cassette domain-containing protein -
  SIR_RS14265 (SIR_0888) rcrQ 906784..908532 (-) 1749 WP_021002790.1 ABC transporter ATP-binding protein Regulator
  SIR_RS14270 (SIR_0889) - 908522..910258 (-) 1737 WP_021002791.1 ABC transporter ATP-binding protein -
  SIR_RS14275 (SIR_0890) - 910475..911272 (-) 798 WP_003077927.1 formate/nitrite transporter family protein -
  SIR_RS14280 (SIR_0891) - 911447..912154 (-) 708 WP_003077899.1 glucosaminidase domain-containing protein -
  SIR_RS14285 (SIR_0892) yihA 912277..912864 (-) 588 WP_003068868.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65123.54 Da        Isoelectric Point: 7.5589

>NTDB_id=51104 SIR_RS14265 WP_021002790.1 906784..908532(-) (rcrQ) [Streptococcus intermedius B196]
MKTRYSTSRLKRLANDLLQQRWLFLLATVGTIVQVVLTIYLPILIGEAIDSVLFPDAGRYLLPILSKMGIVIVANAVVQW
LNPLIYNQLIYSYSQQLRNAVIQKIHHLSLAYLDRQGSGDLVSRLTTDVEQLNNGLLMVFNQFFVGVLTILVTIVTMAKI
DFFMMALVLLLTPLSMLIADFIARKSYKLFQKQTTARGLQTQFIEESLSQESLIQSFNAQEQFIASFTKGNESYANYSQE
AIFYSSTVNPATRFVNALIYAMIVGFGAARIINGSSFTVGQLVTFLNYVNQYTKPFNDISSVMAELQSALACAERLYTIL
DEKELVEIGKEELTSETVFGAIHFEHICFGYEKNKPLIHDLNMTIPAGSKVAIVGPTGAGKSTLINLLMRFYNVDAGKIK
LDDRDITNYTRMSFRQQFGMVLQETWLKKTTIHNNIAFGRPEASREEVIAAAKAANAHFFIQQLPNGYDTYLADAGDSLS
QGQRQLLTIARVFLAVPKILILDEATSSIDTRTEVLIQKAFNKLMVGRTSFIIAHRLSTIQNADIILVLVDGDIVEHGSH
QELMQAKGMYYQMQTAQGSLAI

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=51104 SIR_RS14265 WP_021002790.1 906784..908532(-) (rcrQ) [Streptococcus intermedius B196]
ATGAAAACTAGATATTCTACAAGTAGGTTGAAGCGTCTAGCGAATGATTTATTACAACAACGTTGGCTTTTTCTGTTAGC
CACGGTTGGAACGATTGTTCAAGTTGTTTTGACAATTTATTTGCCGATTTTGATTGGCGAGGCTATTGATAGTGTTTTAT
TTCCTGATGCTGGTCGATATTTGCTTCCAATTCTTTCAAAAATGGGGATTGTAATTGTTGCCAATGCAGTAGTTCAATGG
CTCAATCCTTTAATCTATAATCAGTTGATTTATAGTTATAGTCAGCAACTTCGTAATGCTGTCATTCAAAAAATTCATCA
TCTTTCCTTGGCTTATCTTGATCGTCAAGGAAGTGGTGATTTAGTGAGTCGCTTAACAACGGATGTGGAGCAGTTAAATA
ATGGGTTGCTCATGGTTTTTAATCAATTTTTTGTAGGTGTACTGACTATTCTTGTAACAATTGTGACAATGGCAAAGATT
GACTTTTTCATGATGGCATTGGTCTTGCTATTAACTCCCTTATCTATGCTGATTGCGGATTTTATCGCTCGTAAAAGCTA
CAAGTTGTTTCAAAAACAGACAACAGCTCGGGGGCTTCAGACACAATTTATCGAAGAAAGTCTCTCTCAGGAAAGTTTGA
TTCAAAGTTTTAATGCTCAAGAGCAGTTCATTGCGAGCTTTACAAAGGGGAATGAAAGCTATGCGAACTATTCTCAGGAA
GCGATTTTCTATTCCTCGACTGTCAATCCAGCAACGCGTTTTGTAAATGCTCTTATCTATGCGATGATTGTAGGATTTGG
TGCAGCTCGTATCATCAATGGTTCCAGTTTTACAGTTGGACAATTAGTAACTTTCTTAAATTATGTGAACCAATATACTA
AACCATTTAACGATATTTCGTCTGTCATGGCCGAATTACAAAGCGCCCTTGCTTGTGCAGAACGCTTGTACACGATTTTA
GATGAAAAGGAACTTGTAGAAATTGGAAAAGAAGAACTTACGAGTGAGACTGTCTTTGGAGCTATTCATTTTGAACATAT
ATGTTTTGGTTATGAAAAAAACAAGCCCTTGATTCATGATTTAAATATGACCATTCCTGCGGGAAGCAAAGTTGCTATTG
TTGGGCCAACTGGCGCAGGAAAGTCTACCTTGATCAATCTTCTGATGCGCTTTTATAATGTGGATGCGGGCAAGATAAAG
CTAGACGATCGAGATATTACAAATTATACTCGAATGTCCTTCCGCCAGCAGTTTGGCATGGTGTTACAAGAAACGTGGCT
GAAAAAGACTACAATTCATAATAATATTGCTTTTGGGCGACCAGAAGCGAGTCGAGAAGAAGTGATAGCAGCTGCTAAAG
CAGCGAATGCACATTTTTTTATTCAGCAATTACCGAATGGTTATGACACTTATCTAGCGGACGCAGGTGACTCTTTATCA
CAAGGACAACGGCAGTTATTGACGATTGCGCGTGTTTTTCTAGCTGTACCTAAAATATTAATTTTAGACGAAGCAACTTC
ATCCATTGATACACGAACCGAAGTGCTTATTCAAAAAGCTTTTAATAAGCTAATGGTAGGAAGAACCAGTTTTATCATTG
CTCATCGTCTGTCTACTATTCAAAATGCAGATATCATCTTGGTTTTGGTTGATGGTGATATTGTCGAACATGGCAGTCAT
CAGGAATTGATGCAAGCGAAAGGTATGTATTATCAAATGCAGACAGCGCAGGGAAGTTTGGCTATTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(25-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1ZFL0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.619

99.313

0.393

Multiple sequence alignment