Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SPAF_RS01600 Genome accession   NC_017905
Coordinates   304010..305041 (+) Length   343 a.a.
NCBI ID   WP_115276785.1    Uniprot ID   -
Organism   Streptococcus parasanguinis FW213     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 299010..310041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPAF_RS01575 (Spaf_0280) - 299078..299867 (+) 790 Protein_269 hypothetical protein -
  SPAF_RS01580 (Spaf_0281) - 300010..301320 (+) 1311 WP_003019113.1 glycosyltransferase -
  SPAF_RS01585 (Spaf_0282) - 301329..302432 (+) 1104 WP_014712775.1 glycosyl hydrolase family 8 -
  SPAF_RS01590 (Spaf_0283) - 302658..303050 (+) 393 WP_041826517.1 DUF1033 family protein -
  SPAF_RS01595 (Spaf_0284) comYA 303136..304077 (+) 942 WP_003019098.1 competence type IV pilus ATPase ComGA Machinery gene
  SPAF_RS01600 (Spaf_0286) comYB 304010..305041 (+) 1032 WP_115276785.1 competence type IV pilus assembly protein ComGB Machinery gene
  SPAF_RS01605 (Spaf_0287) comYC 305038..305355 (+) 318 WP_003019171.1 competence type IV pilus major pilin ComGC Machinery gene
  SPAF_RS01610 (Spaf_0288) comYD 305345..305749 (+) 405 WP_003004513.1 competence type IV pilus minor pilin ComGD Machinery gene
  SPAF_RS01615 (Spaf_0289) comGE 305715..306002 (+) 288 WP_041826198.1 competence type IV pilus minor pilin ComGE -
  SPAF_RS01620 (Spaf_0290) comGF/cglF 305992..306444 (+) 453 WP_003019060.1 competence type IV pilus minor pilin ComGF Machinery gene
  SPAF_RS01625 (Spaf_0291) comGG 306401..306868 (+) 468 WP_014712781.1 competence type IV pilus minor pilin ComGG -
  SPAF_RS01630 (Spaf_0292) comYH 306899..307852 (+) 954 WP_014712782.1 class I SAM-dependent methyltransferase Machinery gene
  SPAF_RS01635 (Spaf_0293) - 307904..309097 (+) 1194 WP_013904491.1 acetate kinase -
  SPAF_RS01640 (Spaf_0294) - 309170..309901 (+) 732 WP_014712783.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 39232.14 Da        Isoelectric Point: 9.5419

>NTDB_id=51105 SPAF_RS01600 WP_115276785.1 304010..305041(+) (comYB) [Streptococcus parasanguinis FW213]
MSWLNRDISSWLRRKPKKLSTAKQKQIIELFLNLYSSGFHLSEIVDFLGRSHLVESRLVSQMREDLSRGKSFSDMMAGIG
FSDAVTTQLSLAELHGNLALSLEKISAYLENMCKVKKKLIEVSTYPLILLGFLVLIMLGLRNYLLPQMDAQNIGTQLISS
FPQLFLALGAGLVTFFLLGFLYYRQSGKINVFRTLSHLPFGKGMIQAYLTAYYAREWGNLIGQGLELSQIFSMMQEQKSQ
LFQEIGRDLALSLDRGQSFSETVRGYPFFKKELPLMIEYGEVKSKLGSELEIYAEKTWEDFFRRVHKAMNVIQPLVFVFV
ALVIVLLYAAMLLPIYQNMEVHL

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=51105 SPAF_RS01600 WP_115276785.1 304010..305041(+) (comYB) [Streptococcus parasanguinis FW213]
ATCTCTTGGCTCAATCGGGATATATCCAGCTGGCTCAGGCGCAAGCCGAAAAAATTATCTACCGCTAAACAAAAGCAAAT
CATCGAATTATTTTTGAATCTTTATTCGAGTGGTTTTCATCTGTCTGAGATCGTCGATTTTCTGGGTCGCTCCCACCTAG
TGGAGAGTCGGTTGGTCTCTCAGATGCGGGAAGATCTCTCTCGTGGGAAGAGTTTCTCAGATATGATGGCGGGGATCGGT
TTTTCAGATGCGGTCACGACACAGCTGTCTCTCGCTGAGCTCCATGGCAATCTTGCATTGAGCTTGGAGAAAATCAGTGC
TTACTTAGAAAACATGTGCAAGGTCAAGAAAAAGCTGATTGAGGTCAGCACTTATCCTCTTATCTTGCTTGGATTTTTGG
TTCTGATTATGCTAGGCTTGCGCAATTATTTGCTCCCTCAAATGGATGCTCAAAATATTGGGACGCAATTGATCAGTTCC
TTCCCCCAACTCTTTTTGGCCTTAGGAGCGGGACTGGTGACCTTCTTCTTACTCGGCTTTCTCTATTACCGCCAGTCAGG
CAAGATCAACGTTTTTAGAACTTTGTCTCATCTGCCTTTCGGTAAAGGCATGATTCAAGCTTATTTGACAGCCTATTATG
CCAGAGAATGGGGAAATCTGATTGGGCAAGGATTGGAATTGTCTCAGATTTTTTCCATGATGCAGGAGCAAAAATCCCAG
CTTTTTCAAGAAATTGGAAGGGATTTAGCTCTTTCTTTAGATCGTGGCCAGTCCTTTTCAGAGACGGTCAGGGGGTATCC
TTTTTTCAAAAAAGAATTGCCCCTTATGATTGAATATGGTGAAGTCAAATCAAAGCTCGGAAGTGAGCTAGAAATCTACG
CTGAAAAAACCTGGGAAGATTTCTTTCGTCGGGTTCACAAGGCTATGAATGTGATACAACCTTTGGTGTTTGTCTTTGTA
GCTCTTGTGATTGTGTTACTCTATGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGGTTCATTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(214-334)

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

65.889

100

0.659
  comGB/cglB Streptococcus mitis SK321

66.369

97.959

0.65
  comGB/cglB Streptococcus mitis NCTC 12261

65.774

97.959

0.644
  comGB/cglB Streptococcus pneumoniae TIGR4

65.476

97.959

0.641
  comGB/cglB Streptococcus pneumoniae R6

65.476

97.959

0.641
  comGB/cglB Streptococcus pneumoniae Rx1

65.476

97.959

0.641
  comGB/cglB Streptococcus pneumoniae D39

65.476

97.959

0.641
  comYB Streptococcus mutans UA159

57.307

100

0.583
  comYB Streptococcus mutans UA140

57.307

100

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

48.665

98.251

0.478

Multiple sequence alignment