Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   STCNRZ1575_RS08925 Genome accession   NZ_CP065490
Coordinates   1709844..1710785 (-) Length   313 a.a.
NCBI ID   WP_084829888.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704844..1715785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08885 (STCNRZ1575_08840) - 1704920..1706113 (-) 1194 WP_014608740.1 acetate kinase -
  STCNRZ1575_RS08890 (STCNRZ1575_08845) comYH 1706169..1707125 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STCNRZ1575_RS08895 (STCNRZ1575_08850) comGG 1707170..1707487 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  STCNRZ1575_RS08900 (STCNRZ1575_08855) comYF 1707465..1707902 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  STCNRZ1575_RS08905 (STCNRZ1575_08860) comGE 1707886..1708179 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  STCNRZ1575_RS08910 (STCNRZ1575_08865) comGD 1708151..1708579 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  STCNRZ1575_RS08915 (STCNRZ1575_08870) comYC 1708539..1708865 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STCNRZ1575_RS08920 (STCNRZ1575_08875) comYB 1708862..1709962 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STCNRZ1575_RS08925 (STCNRZ1575_08880) comYA 1709844..1710785 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  STCNRZ1575_RS08930 (STCNRZ1575_08885) - 1710866..1711228 (-) 363 WP_011226630.1 DUF1033 family protein -
  STCNRZ1575_RS08935 (STCNRZ1575_08890) rpoC 1711387..1715025 (-) 3639 WP_011681690.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35421.62 Da        Isoelectric Point: 6.3927

>NTDB_id=510808 STCNRZ1575_RS08925 WP_084829888.1 1709844..1710785(-) (comYA) [Streptococcus thermophilus strain CNRZ1575]
MVTEFAKEMIKNADSCGAQDIYVIPRQDNYELYMRVGQERRLIDVYRPDFMASLIGHFKFVAGMMVGEKRRSQLGSCDYD
CGDGHLVSLRLSTVGDYRGLESLVIRILHSERRELVYWNQGIQPIKDALDYRGLYLFAGPVGSGKTTLMHELVQERFKGQ
QVISIEDPVEIKQDNVLQLQVNQAIDMTYDSLIKLSLRHRPDVLIIGEIRDKETARAVIRASLTGVIVLSTIHAKSIAGV
YERLLDLGVDKSELDNALQGIAYMRLIKGGGVIDFARENFQNHSSTNWNQQLEGLVKQGCLTERDIQGEKIKD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=510808 STCNRZ1575_RS08925 WP_084829888.1 1709844..1710785(-) (comYA) [Streptococcus thermophilus strain CNRZ1575]
ATGGTAACAGAATTTGCTAAGGAAATGATAAAAAATGCTGATAGTTGTGGGGCTCAAGACATCTATGTCATTCCACGTCA
GGATAATTATGAGCTTTATATGCGAGTCGGGCAAGAGAGGAGATTGATTGATGTATATCGGCCTGATTTCATGGCTAGTC
TTATTGGTCACTTTAAATTTGTGGCGGGAATGATGGTGGGTGAGAAGCGTAGGAGTCAACTGGGTTCATGTGACTATGAT
TGTGGTGACGGTCACTTGGTTTCTCTGCGTTTATCAACTGTTGGAGACTATCGAGGTTTGGAGAGCTTGGTTATCCGTAT
CCTACATTCTGAACGTCGGGAATTAGTGTATTGGAATCAAGGAATCCAGCCTATTAAGGATGCCTTGGATTATAGAGGAC
TGTATCTCTTTGCGGGTCCCGTAGGTTCTGGGAAGACCACACTTATGCATGAGTTGGTTCAGGAGCGTTTTAAGGGGCAG
CAGGTAATTTCTATTGAGGATCCTGTTGAAATCAAACAGGATAATGTCTTGCAACTCCAGGTTAATCAGGCGATTGATAT
GACCTATGATAGTTTGATTAAGCTATCTCTACGTCACCGTCCAGATGTTTTGATTATTGGGGAGATTCGGGATAAGGAGA
CTGCCCGGGCAGTTATTAGAGCTAGTCTAACAGGTGTAATTGTTCTCTCAACTATTCATGCTAAGAGTATTGCTGGCGTT
TACGAACGTCTCTTGGACCTTGGCGTAGATAAGTCTGAGTTGGATAATGCTCTACAAGGCATTGCCTACATGCGTTTGAT
CAAGGGAGGAGGTGTGATTGATTTTGCCAGAGAAAATTTCCAAAACCATTCGTCGACCAACTGGAATCAGCAGTTGGAAG
GTTTGGTTAAACAAGGATGTCTCACTGAGAGGGATATCCAAGGGGAAAAAATTAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

64.856

100

0.649
  comYA Streptococcus mutans UA140

64.856

100

0.649
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

65.273

99.361

0.649
  comGA/cglA/cilD Streptococcus pneumoniae D39

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae R6

63.987

99.361

0.636
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

63.987

99.361

0.636
  comYA Streptococcus gordonii str. Challis substr. CH1

62.939

100

0.629
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.538

99.681

0.613
  comGA Lactococcus lactis subsp. cremoris KW2

50.804

99.361

0.505
  comGA Latilactobacillus sakei subsp. sakei 23K

38.816

97.125

0.377