Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   STCNRZ1575_RS08900 Genome accession   NZ_CP065490
Coordinates   1707465..1707902 (-) Length   145 a.a.
NCBI ID   WP_082309153.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CNRZ1575     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702465..1712902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STCNRZ1575_RS08860 (STCNRZ1575_08820) - 1702529..1703191 (-) 663 WP_023909970.1 type II CAAX endopeptidase family protein -
  STCNRZ1575_RS08865 (STCNRZ1575_08825) - 1703288..1703731 (-) 444 WP_011681680.1 hypothetical protein -
  STCNRZ1575_RS08870 - 1703805..1704143 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  STCNRZ1575_RS08875 - 1704187..1704462 (-) 276 WP_011681681.1 hypothetical protein -
  STCNRZ1575_RS08880 (STCNRZ1575_08835) - 1704474..1704671 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  STCNRZ1575_RS08885 (STCNRZ1575_08840) - 1704920..1706113 (-) 1194 WP_014608740.1 acetate kinase -
  STCNRZ1575_RS08890 (STCNRZ1575_08845) comYH 1706169..1707125 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  STCNRZ1575_RS08895 (STCNRZ1575_08850) comGG 1707170..1707487 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  STCNRZ1575_RS08900 (STCNRZ1575_08855) comYF 1707465..1707902 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  STCNRZ1575_RS08905 (STCNRZ1575_08860) comGE 1707886..1708179 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  STCNRZ1575_RS08910 (STCNRZ1575_08865) comGD 1708151..1708579 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  STCNRZ1575_RS08915 (STCNRZ1575_08870) comYC 1708539..1708865 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  STCNRZ1575_RS08920 (STCNRZ1575_08875) comYB 1708862..1709962 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  STCNRZ1575_RS08925 (STCNRZ1575_08880) comYA 1709844..1710785 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  STCNRZ1575_RS08930 (STCNRZ1575_08885) - 1710866..1711228 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16423.93 Da        Isoelectric Point: 8.9531

>NTDB_id=510805 STCNRZ1575_RS08900 WP_082309153.1 1707465..1707902(-) (comYF) [Streptococcus thermophilus strain CNRZ1575]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide


Download         Length: 438 bp        

>NTDB_id=510805 STCNRZ1575_RS08900 WP_082309153.1 1707465..1707902(-) (comYF) [Streptococcus thermophilus strain CNRZ1575]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(39-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

58.156

97.241

0.566
  comYF Streptococcus mutans UA159

57.447

97.241

0.559
  comGF/cglF Streptococcus pneumoniae D39

48.571

96.552

0.469
  comGF/cglF Streptococcus pneumoniae Rx1

48.571

96.552

0.469
  comGF/cglF Streptococcus pneumoniae R6

48.571

96.552

0.469
  comGF/cglF Streptococcus pneumoniae TIGR4

48.571

96.552

0.469
  comGF/cglF Streptococcus mitis NCTC 12261

47.518

97.241

0.462
  comGF/cglF Streptococcus mitis SK321

46.099

97.241

0.448
  comGF Lactococcus lactis subsp. cremoris KW2

45.324

95.862

0.434