Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   I5776_RS19855 Genome accession   NZ_CP065425
Coordinates   3997485..3997838 (-) Length   117 a.a.
NCBI ID   WP_202778219.1    Uniprot ID   -
Organism   Heyndrickxia vini strain JCM 19841     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3992485..4002838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I5776_RS19840 (I5776_19830) - 3992793..3994358 (+) 1566 WP_202778216.1 SWIM zinc finger family protein -
  I5776_RS19845 (I5776_19835) - 3994351..3997143 (+) 2793 WP_202778217.1 DEAD/DEAH box helicase -
  I5776_RS19850 (I5776_19840) - 3997287..3997466 (-) 180 WP_202778218.1 hypothetical protein -
  I5776_RS19855 (I5776_19845) ssbB 3997485..3997838 (-) 354 WP_202778219.1 single-stranded DNA-binding protein Machinery gene
  I5776_RS19860 (I5776_19850) - 3998098..3998535 (+) 438 WP_202778220.1 YwpF-like family protein -
  I5776_RS19865 (I5776_19855) - 3998612..3998962 (-) 351 WP_202778221.1 hypothetical protein -
  I5776_RS19870 (I5776_19860) fabZ 3999047..3999472 (-) 426 WP_066231207.1 3-hydroxyacyl-ACP dehydratase FabZ -
  I5776_RS19875 (I5776_19865) - 3999523..3999789 (-) 267 WP_202778222.1 DNA-directed RNA polymerase subunit beta -
  I5776_RS19880 (I5776_19870) - 3999804..4000637 (-) 834 WP_202778223.1 flagellar hook-basal body protein -
  I5776_RS19885 (I5776_19875) - 4000666..4001475 (-) 810 WP_202778224.1 flagellar hook-basal body protein -
  I5776_RS19890 (I5776_19880) - 4001518..4002516 (-) 999 WP_202778225.1 rod shape-determining protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13059.97 Da        Isoelectric Point: 9.3319

>NTDB_id=509470 I5776_RS19855 WP_202778219.1 3997485..3997838(-) (ssbB) [Heyndrickxia vini strain JCM 19841]
MLNQVTLVGRLTKKPELRYTLEGKAVMNVTLALNRQYKNSAGEYDADFVLCTLWNKAAENTAKYCTKGSILGVVGKIQTR
NYENQDGKKVYVTEVVADSVKFLGGKPSEDRELHITT

Nucleotide


Download         Length: 354 bp        

>NTDB_id=509470 I5776_RS19855 WP_202778219.1 3997485..3997838(-) (ssbB) [Heyndrickxia vini strain JCM 19841]
TTGTTAAATCAAGTGACCTTAGTTGGCAGGTTAACAAAAAAACCTGAGCTTCGTTATACGCTGGAAGGGAAAGCGGTAAT
GAATGTTACACTTGCACTTAATAGGCAATATAAGAATAGTGCCGGTGAATATGATGCTGATTTTGTCTTATGTACACTAT
GGAATAAGGCCGCCGAAAATACAGCGAAATATTGTACGAAAGGGTCCATTCTAGGCGTTGTTGGAAAGATTCAAACGAGA
AATTATGAAAATCAGGATGGGAAGAAGGTGTATGTGACTGAGGTAGTTGCCGATTCGGTAAAATTTTTAGGTGGAAAACC
TTCGGAAGATAGGGAGCTCCATATAACAACTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.138

93.162

0.607
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

90.598

0.538
  ssb Latilactobacillus sakei subsp. sakei 23K

54.369

88.034

0.479
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.283

90.598

0.41
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

90.598

0.41
  ssbB/cilA Streptococcus mitis NCTC 12261

45.283

90.598

0.41
  ssbB/cilA Streptococcus pneumoniae Rx1

44.34

90.598

0.402
  ssbB/cilA Streptococcus pneumoniae D39

44.34

90.598

0.402
  ssbB/cilA Streptococcus pneumoniae R6

44.34

90.598

0.402
  ssbB/cilA Streptococcus mitis SK321

44.34

90.598

0.402
  ssbA Streptococcus mutans UA159

44.34

90.598

0.402
  ssbB Lactococcus lactis subsp. cremoris KW2

42.056

91.453

0.385