Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BTD91_RS06470 Genome accession   NZ_CP065150
Coordinates   1493115..1494227 (+) Length   370 a.a.
NCBI ID   WP_077681027.1    Uniprot ID   -
Organism   Vibrio kanaloae strain R17     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1488115..1499227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTD91_RS06450 (BTD91_06450) rsmB 1489001..1490281 (-) 1281 WP_017099685.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  BTD91_RS06455 (BTD91_06455) fmt 1490374..1491321 (-) 948 WP_017055426.1 methionyl-tRNA formyltransferase -
  BTD91_RS06460 (BTD91_06460) def 1491359..1491871 (-) 513 WP_004735769.1 peptide deformylase -
  BTD91_RS06465 (BTD91_06465) - 1492012..1493118 (+) 1107 WP_077681028.1 LysM peptidoglycan-binding domain-containing protein -
  BTD91_RS06470 (BTD91_06470) dprA 1493115..1494227 (+) 1113 WP_077681027.1 DNA-processing protein DprA Machinery gene
  BTD91_RS06475 (BTD91_06475) - 1494231..1494707 (+) 477 WP_077681026.1 DUF494 family protein -
  BTD91_RS06480 (BTD91_06480) - 1494720..1495289 (+) 570 WP_077681025.1 type I DNA topoisomerase -
  BTD91_RS06485 (BTD91_06485) - 1495394..1496524 (-) 1131 WP_077681024.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BTD91_RS06490 (BTD91_06490) purE 1496530..1497015 (-) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BTD91_RS06495 (BTD91_06495) - 1497211..1497768 (+) 558 WP_017055420.1 L-threonylcarbamoyladenylate synthase -
  BTD91_RS06500 (BTD91_06500) hemF 1497788..1498705 (+) 918 WP_017055419.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40164.91 Da        Isoelectric Point: 6.8796

>NTDB_id=507421 BTD91_RS06470 WP_077681027.1 1493115..1494227(+) (dprA) [Vibrio kanaloae strain R17]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSNQQLQAIGLSAKQISYLREQAPREVEACLVWQARQPNHHII
TPNCPHYPKLLNETASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLGSIYPARHRNLADRICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHSPTSRGGNSLIKTGACLVQSAQDVLIEIKSLLDWSIEQQPSLFELTPNEDENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=507421 BTD91_RS06470 WP_077681027.1 1493115..1494227(+) (dprA) [Vibrio kanaloae strain R17]
GTGAATGAGCAACAACTGAGCGCTTGGCTAACTCTGAGTTTTGTTCCGCAACTGGGAGGCAAGCGCCTTTCTCGCCTGCT
GAGTATTGACTCTCCTTCCAATATTGTTGGCTACTCAAATCAGCAGCTACAAGCTATTGGGTTGTCAGCTAAGCAAATCT
CCTATTTAAGAGAGCAAGCCCCAAGAGAAGTGGAGGCTTGCTTAGTATGGCAAGCAAGGCAGCCTAATCATCACATCATT
ACCCCAAATTGCCCTCATTATCCTAAACTGCTGAATGAGACCGCCTCTGCGCCAAGCGTACTTTTCGTTAAAGGTCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTATCGAAGGGCTGCAAACCGCGAAGTCTT
TCGCCAAAGAGTTCGTTCAAAACGGTTTGATTGTCACCAGTGGCTTAGCGCTCGGTATTGATGGTTATGCTCATGATGGT
GCTCTAGATAAAGGAGGGGAAACTTTTGCTGTGTTGGGATCAGGCTTGGGCTCCATTTACCCTGCACGTCACCGAAATCT
AGCGGATAGAATTTGTGAGAATGGCGCGCTGATCTCAGAATTCCGCCCAAGCGCTAAACCTCGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTGTCTTTGGGGACTCTCGTTGTTGAGGCTGCTGAGAAAAGCGGTTCTTTGATTACA
GCTCGCTATGCTATGGAGCAAGGCCGAGAAGTGTTTGCGCTTCCTGGCTCAATTCATAGCCCAACCAGCCGCGGAGGCAA
TAGCTTAATCAAAACTGGCGCATGTTTGGTACAGAGCGCTCAAGATGTTCTGATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGAGCAGCAGCCCAGCTTATTCGAACTTACGCCGAATGAGGATGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGGTTAGAAGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

68.022

99.73

0.678
  dprA Vibrio cholerae strain A1552

59.03

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.043

100

0.473
  dprA Haemophilus influenzae Rd KW20

45.401

91.081

0.414
  dprA Legionella pneumophila strain ERS1305867

45.732

88.649

0.405
  dprA Neisseria meningitidis MC58

37.783

100

0.405
  dprA Neisseria meningitidis strain C311

37.783

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.392
  dprA Neisseria gonorrhoeae strain FA1090

36.709

100

0.392
  dprA Acinetobacter baumannii strain A118

41.566

89.73

0.373
  dprA Acinetobacter baumannii D1279779

40.785

89.459

0.365
  dprA Acinetobacter baylyi ADP1

39.645

91.351

0.362