Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | MY9_RS18340 | Genome accession | NC_017743 |
| Coordinates | 3621047..3621388 (-) | Length | 113 a.a. |
| NCBI ID | WP_014665657.1 | Uniprot ID | - |
| Organism | Bacillus sp. JS | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3616047..3626388
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY9_RS18325 (MY9_3694) | - | 3616292..3619060 (+) | 2769 | WP_014665654.1 | DEAD/DEAH box helicase | - |
| MY9_RS18330 (MY9_3695) | ywpJ | 3619185..3620042 (-) | 858 | WP_014665655.1 | phosphatase YwpJ | - |
| MY9_RS18335 (MY9_3696) | glcR | 3620048..3620824 (-) | 777 | WP_041521435.1 | transcriptional regulator GlcR | - |
| MY9_RS18340 (MY9_3697) | ssbB | 3621047..3621388 (-) | 342 | WP_014665657.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| MY9_RS18345 (MY9_3698) | ywpG | 3621465..3621848 (-) | 384 | WP_014665658.1 | DynA interaction protein YwpG | - |
| MY9_RS18350 (MY9_3699) | - | 3622023..3622433 (+) | 411 | WP_014665659.1 | YwpF-like family protein | - |
| MY9_RS18355 (MY9_3700) | - | 3622491..3623129 (-) | 639 | WP_014665660.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12476.14 Da Isoelectric Point: 7.8150
>NTDB_id=50642 MY9_RS18340 WP_014665657.1 3621047..3621388(-) (ssbB) [Bacillus sp. JS]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=50642 MY9_RS18340 WP_014665657.1 3621047..3621388(-) (ssbB) [Bacillus sp. JS]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTATACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTATACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
98.23 |
100 |
0.982 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
93.805 |
0.611 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
45.283 |
93.805 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |