Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   I0K03_RS10625 Genome accession   NZ_CP064875
Coordinates   2089173..2089508 (+) Length   111 a.a.
NCBI ID   WP_000982004.1    Uniprot ID   -
Organism   Bacillus toyonensis strain P18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2084173..2094508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS10600 (I0K03_10600) - 2084467..2085195 (-) 729 WP_200203977.1 hypothetical protein -
  I0K03_RS10605 (I0K03_10605) - 2085305..2085952 (+) 648 WP_000165952.1 HD domain-containing protein -
  I0K03_RS10610 (I0K03_10610) - 2085949..2087844 (+) 1896 WP_087950080.1 ABC-F family ATP-binding cassette domain-containing protein -
  I0K03_RS10615 (I0K03_10615) - 2087920..2088651 (+) 732 WP_001260657.1 Bax inhibitor-1/YccA family protein -
  I0K03_RS10620 (I0K03_10620) - 2088760..2089011 (+) 252 WP_198130570.1 DUF4318 domain-containing protein -
  I0K03_RS10625 (I0K03_10625) ssbA 2089173..2089508 (+) 336 WP_000982004.1 single-stranded DNA-binding protein Machinery gene
  I0K03_RS10630 (I0K03_10630) - 2089869..2090258 (+) 390 WP_200203979.1 hypothetical protein -
  I0K03_RS10635 (I0K03_10635) - 2090804..2091931 (+) 1128 WP_200203981.1 conserved virulence factor C family protein -
  I0K03_RS10640 (I0K03_10640) - 2091935..2092318 (+) 384 WP_200203983.1 thiol-disulfide oxidoreductase DCC family protein -
  I0K03_RS10645 (I0K03_10645) - 2092401..2092835 (+) 435 WP_000063715.1 BrxA/BrxB family bacilliredoxin -
  I0K03_RS10650 (I0K03_10650) - 2092885..2093661 (+) 777 WP_000637473.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12763.68 Da        Isoelectric Point: 9.8971

>NTDB_id=505548 I0K03_RS10625 WP_000982004.1 2089173..2089508(+) (ssbA) [Bacillus toyonensis strain P18]
MMNRVVLIGRLTKDPELYYTKQGVAYARICVAVNRVFRNSLGEQQADFINCVVWRRAAENVTEYCTKGSLVGITGRIHTN
NYDDEKGKKIYRTEVVIESITFLERRRKGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=505548 I0K03_RS10625 WP_000982004.1 2089173..2089508(+) (ssbA) [Bacillus toyonensis strain P18]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGATCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCAGTGAATAGAGTATTTCGAAATAGTTTAGGTGAACAACAAGCAGATTTTATAAATTGTGTCGTTT
GGCGAAGAGCAGCTGAAAATGTAACAGAATATTGTACGAAGGGATCACTTGTTGGAATTACAGGGCGTATTCATACGAAT
AATTACGATGATGAAAAAGGAAAGAAAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGAG
GAAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

95.495

0.495
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

97.297

0.486
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae D39

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae R6

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis SK321

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405