Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IQ680_RS18145 | Genome accession | NZ_CP064266 |
| Coordinates | 3543678..3544016 (+) | Length | 112 a.a. |
| NCBI ID | WP_243521842.1 | Uniprot ID | - |
| Organism | Bacillus pseudomycoides strain N451-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3538678..3549016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IQ680_RS18125 | - | 3539420..3540067 (-) | 648 | WP_243521838.1 | hypothetical protein | - |
| IQ680_RS18130 | - | 3540177..3540824 (+) | 648 | WP_243521839.1 | HD domain-containing protein | - |
| IQ680_RS18135 | - | 3540821..3542713 (+) | 1893 | WP_243521840.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| IQ680_RS18140 | - | 3542789..3543520 (+) | 732 | WP_243521841.1 | Bax inhibitor-1/YccA family protein | - |
| IQ680_RS18145 | ssbA | 3543678..3544016 (+) | 339 | WP_243521842.1 | single-stranded DNA-binding protein | Machinery gene |
| IQ680_RS18150 | - | 3545089..3545445 (+) | 357 | WP_243521843.1 | flagellar basal body rod protein | - |
| IQ680_RS18155 | - | 3545683..3546333 (+) | 651 | WP_243521844.1 | PspA/IM30 family protein | - |
| IQ680_RS18160 | - | 3546700..3547827 (+) | 1128 | WP_098337076.1 | conserved virulence factor C family protein | - |
| IQ680_RS18165 | - | 3547832..3548215 (+) | 384 | WP_243521845.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| IQ680_RS18170 | - | 3548299..3548733 (+) | 435 | WP_243521846.1 | BrxA/BrxB family bacilliredoxin | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 13028.91 Da Isoelectric Point: 9.5623
>NTDB_id=500423 IQ680_RS18145 WP_243521842.1 3543678..3544016(+) (ssbA) [Bacillus pseudomycoides strain N451-2]
MMNRVVLIGRLTKDPELYYTKQGIAYARICVAVNRGFRNSLGEQQADYIYCVVWRKSAENVSEYCQKGSLVGITGRIHTN
NYDNEQGKRVYKTEVVIERITFLERKKEEASR
MMNRVVLIGRLTKDPELYYTKQGIAYARICVAVNRGFRNSLGEQQADYIYCVVWRKSAENVSEYCQKGSLVGITGRIHTN
NYDNEQGKRVYKTEVVIERITFLERKKEEASR
Nucleotide
Download Length: 339 bp
>NTDB_id=500423 IQ680_RS18145 WP_243521842.1 3543678..3544016(+) (ssbA) [Bacillus pseudomycoides strain N451-2]
ATGATGAATCGAGTTGTATTAATCGGAAGATTGACGAAAGATCCAGAACTATACTACACAAAGCAAGGAATCGCCTATGC
ACGTATATGTGTTGCGGTAAATAGAGGATTTCGGAATAGCCTAGGGGAGCAGCAAGCTGACTACATTTACTGCGTCGTCT
GGAGAAAATCTGCTGAGAATGTATCAGAGTATTGCCAAAAGGGTTCACTTGTTGGGATTACAGGTCGTATTCATACAAAT
AATTATGATAATGAACAGGGGAAAAGAGTGTATAAAACAGAAGTTGTGATTGAAAGAATTACGTTTTTGGAGCGGAAGAA
AGAGGAAGCTTCACGGTAG
ATGATGAATCGAGTTGTATTAATCGGAAGATTGACGAAAGATCCAGAACTATACTACACAAAGCAAGGAATCGCCTATGC
ACGTATATGTGTTGCGGTAAATAGAGGATTTCGGAATAGCCTAGGGGAGCAGCAAGCTGACTACATTTACTGCGTCGTCT
GGAGAAAATCTGCTGAGAATGTATCAGAGTATTGCCAAAAGGGTTCACTTGTTGGGATTACAGGTCGTATTCATACAAAT
AATTATGATAATGAACAGGGGAAAAGAGTGTATAAAACAGAAGTTGTGATTGAAAGAATTACGTTTTTGGAGCGGAAGAA
AGAGGAAGCTTCACGGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.944 |
95.536 |
0.554 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.046 |
97.321 |
0.536 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.679 |
100 |
0.527 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.071 |
100 |
0.411 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.441 |
99.107 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
38.393 |
100 |
0.384 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
38.393 |
100 |
0.384 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
37.5 |
100 |
0.375 |
| ssbB/cilA | Streptococcus mitis SK321 |
37.5 |
100 |
0.375 |
| ssbA | Streptococcus mutans UA159 |
37.5 |
100 |
0.375 |