Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IRJ28_RS21645 Genome accession   NZ_CP064096
Coordinates   4114321..4114662 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain N1142-3at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4109321..4119662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ28_RS21605 rapD 4109455..4110519 (-) 1065 WP_003227782.1 aspartate phosphatase RapD -
  IRJ28_RS21610 fabZ 4110711..4111136 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IRJ28_RS21615 mscL 4111209..4111601 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  IRJ28_RS21620 ywpD 4111648..4112484 (-) 837 WP_003227787.1 histidine kinase -
  IRJ28_RS21625 - 4112368..4112757 (+) 390 WP_009968292.1 prealbumin-like fold domain-containing protein -
  IRJ28_RS21630 - 4112744..4113136 (+) 393 Protein_4209 class A sortase -
  IRJ28_RS21635 ywpF 4113276..4113686 (-) 411 WP_003227794.1 YwpF-like family protein -
  IRJ28_RS21640 ywpG 4113861..4114244 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  IRJ28_RS21645 ssbB 4114321..4114662 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  IRJ28_RS21650 glcR 4114886..4115662 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  IRJ28_RS21655 ywpJ 4115668..4116525 (+) 858 WP_003242946.1 phosphatase YwpJ -
  IRJ28_RS21660 hepA 4116651..4119419 (-) 2769 WP_003227803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=499518 IRJ28_RS21645 WP_003227798.1 4114321..4114662(+) (ssbB) [Bacillus subtilis strain N1142-3at]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=499518 IRJ28_RS21645 WP_003227798.1 4114321..4114662(+) (ssbB) [Bacillus subtilis strain N1142-3at]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389