Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IRJ27_RS12475 Genome accession   NZ_CP064095
Coordinates   2434402..2434743 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain N1303-2Ay     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2429402..2439743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS12435 rapD 2429536..2430600 (-) 1065 WP_003227782.1 aspartate phosphatase RapD -
  IRJ27_RS12440 fabZ 2430792..2431217 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IRJ27_RS12445 mscL 2431290..2431682 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  IRJ27_RS12450 ywpD 2431729..2432565 (-) 837 WP_003227787.1 histidine kinase -
  IRJ27_RS12455 - 2432449..2432838 (+) 390 WP_009968292.1 prealbumin-like fold domain-containing protein -
  IRJ27_RS12460 - 2432825..2433217 (+) 393 Protein_2408 class A sortase -
  IRJ27_RS12465 ywpF 2433357..2433767 (-) 411 WP_003227794.1 YwpF-like family protein -
  IRJ27_RS12470 ywpG 2433942..2434325 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  IRJ27_RS12475 ssbB 2434402..2434743 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  IRJ27_RS12480 glcR 2434967..2435743 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  IRJ27_RS12485 ywpJ 2435749..2436606 (+) 858 WP_003242946.1 phosphatase YwpJ -
  IRJ27_RS12490 hepA 2436732..2439500 (-) 2769 WP_003227803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=499402 IRJ27_RS12475 WP_003227798.1 2434402..2434743(+) (ssbB) [Bacillus subtilis strain N1303-2Ay]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=499402 IRJ27_RS12475 WP_003227798.1 2434402..2434743(+) (ssbB) [Bacillus subtilis strain N1303-2Ay]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389