Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   IRJ26_RS10275 Genome accession   NZ_CP064094
Coordinates   1945554..1945895 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain N1108-5at     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1940554..1950895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS10235 rapD 1940688..1941752 (-) 1065 WP_003227782.1 aspartate phosphatase RapD -
  IRJ26_RS10240 fabZ 1941944..1942369 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  IRJ26_RS10245 mscL 1942442..1942834 (+) 393 WP_003242893.1 large conductance mechanosensitive channel protein MscL -
  IRJ26_RS10250 ywpD 1942881..1943717 (-) 837 WP_003227787.1 histidine kinase -
  IRJ26_RS10255 - 1943646..1943990 (+) 345 WP_032730325.1 prealbumin-like fold domain-containing protein -
  IRJ26_RS10260 - 1943977..1944369 (+) 393 Protein_1965 class A sortase -
  IRJ26_RS10265 ywpF 1944509..1944919 (-) 411 WP_003227794.1 YwpF-like family protein -
  IRJ26_RS10270 ywpG 1945094..1945477 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  IRJ26_RS10275 ssbB 1945554..1945895 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  IRJ26_RS10280 glcR 1946119..1946895 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  IRJ26_RS10285 ywpJ 1946901..1947758 (+) 858 WP_003242946.1 phosphatase YwpJ -
  IRJ26_RS10290 hepA 1947884..1950652 (-) 2769 WP_003227803.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=499310 IRJ26_RS10275 WP_003227798.1 1945554..1945895(+) (ssbB) [Bacillus subtilis strain N1108-5at]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=499310 IRJ26_RS10275 WP_003227798.1 1945554..1945895(+) (ssbB) [Bacillus subtilis strain N1108-5at]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389