Detailed information NTG0496131

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: INQ41_RS10385
• Genome accession: NZ_CP063656
• Coordinates: 2304741..2306000 (+)
• Length: 419 a.a.
• NCBI ID: WP_193984254.1
• Uniprot ID: -
• Organism: Novilysobacter ciconiae strain H21R20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2299741..2311000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
INQ41_RS10370 (INQ41_10370)	-	2300568..2301503 (+)	936	WP_193984249.1	M23 family metallopeptidase	-
INQ41_RS10375 (INQ41_10375)	comP	2301873..2302265 (+)	393	WP_193984251.1	pilin	Machinery gene
INQ41_RS10380 (INQ41_10380)	pilB	2302816..2304546 (+)	1731	WP_193984253.1	type IV-A pilus assembly ATPase PilB	Machinery gene
INQ41_RS10385 (INQ41_10385)	pilC	2304741..2306000 (+)	1260	WP_193984254.1	type II secretion system F family protein	Machinery gene
INQ41_RS10390 (INQ41_10390)	pilD	2306014..2306877 (+)	864	WP_193984256.1	A24 family peptidase	Machinery gene
INQ41_RS10395 (INQ41_10395)	coaE	2306960..2307580 (+)	621	WP_193987329.1	dephospho-CoA kinase	-
INQ41_RS10400 (INQ41_10400)	-	2307702..2308694 (-)	993	WP_193987330.1	Nudix family hydrolase	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 45383.02 Da
• Isoelectric Point: 10.2970

>NTDB_id=496131 INQ41_RS10385 WP_193984254.1 2304741..2306000(+) (pilC) [Novilysobacter ciconiae strain H21R20]
MSVSRTAAKKPVVAPRRAEATPLFVWEGTDKRGITMKGEQTAKNANFVRAELRRMGITPKVVKIKPKPLFSAGKKVSPQD
IAVFARQVATMMKAGVPIVGALEIIASGNKNPRMQVLVNSIRSEVESGSSLSEALGKHPVQFDLLFRNLVAAGESAGVLE
TVLDTVATYKENTEALKGKIKKAMFYPAAVVAVALIVSAILLVFVVPMFEDVFASFGAELPAFTMLIIKLSRFMVAWWWL
ILIVAVATVVAFIMVKNRSVAFQFFLDRMILKVPVVGQIIHNSAIARFARTLAVTFRAGVPLVEGLDTVGGATGNIVYEK
AVHRIRDDVAVGYSVNMAMKQVNLFPHMVVQMVAIGEEAGALDTMLLKVAEFYEQEVDNAVDALSSLLEPMIMVFLGVVV
GGMVIAMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=496131 INQ41_RS10385 WP_193984254.1 2304741..2306000(+) (pilC) [Novilysobacter ciconiae strain H21R20]
ATGTCTGTCAGCCGCACTGCCGCCAAGAAACCCGTCGTGGCGCCACGCCGCGCCGAAGCGACGCCGCTGTTCGTGTGGGA
AGGCACCGACAAGCGCGGCATCACCATGAAGGGCGAGCAGACCGCGAAAAACGCCAACTTCGTGCGCGCCGAGCTGCGCC
GGATGGGCATCACACCCAAGGTCGTGAAGATCAAGCCCAAGCCGCTTTTCAGCGCCGGCAAGAAAGTGTCGCCGCAGGAC
ATCGCAGTTTTCGCGCGCCAAGTTGCCACGATGATGAAGGCCGGCGTGCCCATCGTCGGCGCGCTGGAGATCATCGCCAG
CGGAAACAAGAACCCGAGGATGCAGGTGCTGGTCAACTCGATCCGGTCCGAGGTCGAGAGCGGCTCGTCCCTGAGCGAGG
CGCTGGGCAAGCATCCGGTCCAGTTCGACCTGCTGTTCCGCAACCTGGTGGCGGCAGGCGAGTCGGCCGGTGTACTGGAA
ACCGTGCTCGATACGGTGGCGACTTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAGGCGATGTTCTACCC
GGCAGCCGTGGTTGCGGTCGCATTGATCGTCAGCGCGATCCTGCTGGTGTTCGTGGTGCCGATGTTCGAGGACGTGTTTG
CGAGCTTCGGCGCCGAGCTACCGGCGTTCACCATGCTGATCATCAAGCTGAGCCGGTTCATGGTGGCATGGTGGTGGCTG
ATCCTGATCGTCGCGGTGGCCACGGTGGTCGCGTTCATCATGGTCAAGAACCGGTCCGTCGCTTTCCAGTTCTTCCTCGA
CCGGATGATCCTGAAGGTCCCGGTCGTGGGCCAGATCATCCACAACTCCGCCATTGCCCGTTTTGCGCGGACGCTGGCCG
TGACCTTTCGCGCCGGCGTGCCGTTGGTGGAAGGCCTGGATACGGTCGGCGGCGCCACCGGCAACATCGTTTACGAGAAG
GCCGTGCACCGCATCCGAGACGATGTAGCCGTGGGCTACTCGGTCAACATGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTGCAGATGGTGGCCATCGGCGAGGAAGCCGGCGCGCTGGACACGATGCTGTTGAAGGTCGCCGAGTTCTACG
AGCAGGAAGTCGACAACGCGGTGGACGCGCTGTCCAGCCTGCTGGAGCCGATGATCATGGTGTTCCTGGGCGTGGTGGTC
GGCGGCATGGTGATTGCCATGTACCTGCCGATCTTCAAGCTTGGCGCCGTGGTGGGTTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56.079	96.181	0.539
pilC	Legionella pneumophila strain ERS1305867	54.156	94.749	0.513
pilC	Acinetobacter baumannii D1279779	52.206	97.375	0.508
pilC	Acinetobacter baylyi ADP1	51.471	97.375	0.501
pilG	Neisseria gonorrhoeae MS11	44.828	96.897	0.434
pilG	Neisseria meningitidis 44/76-A	44.581	96.897	0.432
pilC	Vibrio campbellii strain DS40M4	41.855	95.227	0.399
pilC	Vibrio cholerae strain A1552	40.806	94.749	0.387
pilC	Thermus thermophilus HB27	37.685	96.897	0.365