Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   INQ41_RS10390 Genome accession   NZ_CP063656
Coordinates   2306014..2306877 (+) Length   287 a.a.
NCBI ID   WP_193984256.1    Uniprot ID   -
Organism   Novilysobacter ciconiae strain H21R20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2301014..2311877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ41_RS10375 (INQ41_10375) comP 2301873..2302265 (+) 393 WP_193984251.1 pilin Machinery gene
  INQ41_RS10380 (INQ41_10380) pilB 2302816..2304546 (+) 1731 WP_193984253.1 type IV-A pilus assembly ATPase PilB Machinery gene
  INQ41_RS10385 (INQ41_10385) pilC 2304741..2306000 (+) 1260 WP_193984254.1 type II secretion system F family protein Machinery gene
  INQ41_RS10390 (INQ41_10390) pilD 2306014..2306877 (+) 864 WP_193984256.1 A24 family peptidase Machinery gene
  INQ41_RS10395 (INQ41_10395) coaE 2306960..2307580 (+) 621 WP_193987329.1 dephospho-CoA kinase -
  INQ41_RS10400 (INQ41_10400) - 2307702..2308694 (-) 993 WP_193987330.1 Nudix family hydrolase -
  INQ41_RS10405 (INQ41_10405) secA 2308691..2311435 (-) 2745 WP_193984258.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31673.57 Da        Isoelectric Point: 8.4751

>NTDB_id=496132 INQ41_RS10390 WP_193984256.1 2306014..2306877(+) (pilD) [Novilysobacter ciconiae strain H21R20]
MAFLDQNPEIGYPLVAGFGLLLGSFLNVVILRMPRRMEWQWQRDSREILGEPETYDPPPPGIVVERSHCPHCKHQLSWYE
NIPLFSWLALRGRCRSCKARISAQYPLVELLTAVLMVACVARFGFGWQGFGAMVFTCFLIALSGIDLRTQLLPDQLTLPL
MWLGLIAAVDNLYIAAKPAVIGAVVGYLSLWVVWWLFKQITGKEGMGHGDFKLLAAIGAWTGLAGILPTVLLSSLVGAII
GSIWLAAKGRDKATPIPFGPYLAVAGWIIFFWGEQLIGGYMRISGLA

Nucleotide


Download         Length: 864 bp        

>NTDB_id=496132 INQ41_RS10390 WP_193984256.1 2306014..2306877(+) (pilD) [Novilysobacter ciconiae strain H21R20]
ATGGCATTCCTCGATCAGAACCCCGAAATCGGCTACCCGCTGGTCGCCGGTTTCGGCCTGCTGCTGGGCAGCTTCCTCAA
TGTGGTGATCCTGCGGATGCCGCGCCGGATGGAGTGGCAATGGCAGCGCGACAGCCGCGAGATCCTCGGCGAGCCGGAGA
CCTACGATCCGCCGCCGCCGGGCATCGTGGTGGAACGCTCGCACTGCCCGCACTGCAAGCACCAGCTGTCCTGGTACGAG
AACATTCCGCTGTTCAGCTGGCTGGCCCTGCGCGGGCGCTGCCGCAGCTGCAAGGCGCGCATCTCGGCGCAGTACCCGCT
GGTGGAGCTGCTGACGGCGGTCCTGATGGTCGCCTGCGTGGCGCGCTTTGGCTTCGGCTGGCAGGGCTTCGGCGCGATGG
TGTTCACCTGCTTTCTGATCGCGCTGTCCGGCATTGACCTGCGGACGCAACTCCTGCCCGACCAGTTGACCCTGCCATTG
ATGTGGCTCGGGTTGATCGCGGCCGTCGACAACCTCTACATAGCCGCCAAACCGGCAGTAATCGGCGCCGTCGTCGGCTA
CCTGAGCCTGTGGGTGGTGTGGTGGCTGTTCAAGCAGATCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGC
TGGCCGCGATTGGTGCCTGGACCGGCCTGGCAGGCATCCTGCCTACGGTGCTGCTGTCATCGCTGGTGGGCGCCATCATC
GGCTCGATCTGGCTGGCGGCGAAAGGCCGCGACAAGGCCACGCCGATTCCGTTTGGGCCGTATCTGGCCGTGGCGGGCTG
GATCATCTTCTTCTGGGGCGAGCAGTTGATCGGCGGCTATATGCGGATCTCCGGTTTGGCCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

47.917

100

0.481
  pilD Acinetobacter nosocomialis M2

48.582

98.258

0.477
  pilD Vibrio cholerae strain A1552

49.818

95.819

0.477
  pilD Vibrio campbellii strain DS40M4

49.064

93.031

0.456
  pilD Neisseria gonorrhoeae MS11

45.756

94.425

0.432