Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | IP585_RS02250 | Genome accession | NZ_CP063454 |
| Coordinates | 497924..499186 (+) | Length | 420 a.a. |
| NCBI ID | WP_019439130.1 | Uniprot ID | - |
| Organism | Pseudomonas putida strain PC-578038 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 492924..504186
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IP585_RS02235 | pilM | 495573..496454 (+) | 882 | WP_014592712.1 | type IV pilus biogenesis protein PilM | - |
| IP585_RS02240 | - | 496451..496987 (+) | 537 | WP_010955628.1 | PilN domain-containing protein | - |
| IP585_RS02245 | - | 496999..498000 (+) | 1002 | WP_014592711.1 | pilus assembly protein PilP | - |
| IP585_RS02250 | pilQ | 497924..499186 (+) | 1263 | WP_019439130.1 | type IV pilus secretin PilQ | Machinery gene |
| IP585_RS02255 | aroK | 499191..499709 (+) | 519 | WP_010955625.1 | shikimate kinase AroK | - |
| IP585_RS02260 | aroB | 499806..500903 (+) | 1098 | WP_041166613.1 | 3-dehydroquinate synthase | - |
| IP585_RS02265 | - | 500919..502508 (+) | 1590 | WP_267273556.1 | SPOR domain-containing protein | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45699.41 Da Isoelectric Point: 4.9883
>NTDB_id=495687 IP585_RS02250 WP_019439130.1 497924..499186(+) (pilQ) [Pseudomonas putida strain PC-578038]
MKTWMNYLLATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVKGSVTLRLQDVPWDQALDLVLR
SKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLSVDERT
NTLVVYLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAGSSIGL
GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPDNKV
IMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKS
ELLVFLTPRIMSDQAIAVSR
MKTWMNYLLATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVKGSVTLRLQDVPWDQALDLVLR
SKGLSRRQEGNVLLVAPAAEFAAQSADARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLSVDERT
NTLVVYLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAGSSIGL
GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPDNKV
IMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKS
ELLVFLTPRIMSDQAIAVSR
Nucleotide
Download Length: 1263 bp
>NTDB_id=495687 IP585_RS02250 WP_019439130.1 497924..499186(+) (pilQ) [Pseudomonas putida strain PC-578038]
ATGAAAACGTGGATGAACTACCTGTTGGCAACCCTGCTGTCGATACCGCTGGCTTCGGCGACGCCTTACCAGGGTGAACC
CCTGTCGCTGAACTTCCAGGATGTTGAGGTGCGTGCGGTGCTGCAGGTGCTGGCTGACTACGCTGGCGTCAACCTGGTCG
CCAGTGATGCAGTAAAAGGCAGTGTCACTTTGCGTTTGCAGGACGTGCCGTGGGATCAGGCGCTTGACCTGGTGCTGCGC
AGCAAGGGCCTGTCCCGGCGCCAGGAGGGCAATGTGCTGTTGGTGGCACCTGCAGCCGAGTTTGCCGCGCAATCGGCAGA
CGCCCGGGTGAGTCAGGCGCTGGATGCGCACCTGCAGCCATTGCGTCGAGAGCTGCTGCCCATTCACCACGCCAAGGCCG
CCGATCTTGCGCAGTTGCTGCTGGCGGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGCTTGAGTGTCGATGAGCGCACC
AATACGTTGGTGGTGTACCTGCCCGCTGACCGCCTGGCCGAGATGCGCCAGCTGGTGGCGCAGTTGGATGTGCCGGTGCG
TCAGGTAGCGATCGAGGCGCGTATCGTCGAAGCCAACGTCGATTATGAGAAAAGCCTGGGGGTACGCTGGGGTGGGCCGC
TGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTG
GGTTTGTTGCGCGGTGACGTGTTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGCGAGATCATTTCGCA
GCCCAAGGTGGTCACGGCCGACAAGGAAACGGCGAGGATACTCAAGGGTACCGAGGTGCCTTACCAGGAAACGAGCCAAA
GCGGCGCTACCTCGGTATCGTTTCGCGAAGCCTCGCTGTCGCTGGAAGTAACGCCACAGATCACCCCGGACAACAAGGTG
ATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATCCGCAAGAACGA
GGTCAATGCCAAGGTTCGTGTGGCTGACGGCGAAACGATCGTGATCGGTGGCGTCTACTCGACTTCGCAAAACAATGTGG
TCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCC
GAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGAAAACGTGGATGAACTACCTGTTGGCAACCCTGCTGTCGATACCGCTGGCTTCGGCGACGCCTTACCAGGGTGAACC
CCTGTCGCTGAACTTCCAGGATGTTGAGGTGCGTGCGGTGCTGCAGGTGCTGGCTGACTACGCTGGCGTCAACCTGGTCG
CCAGTGATGCAGTAAAAGGCAGTGTCACTTTGCGTTTGCAGGACGTGCCGTGGGATCAGGCGCTTGACCTGGTGCTGCGC
AGCAAGGGCCTGTCCCGGCGCCAGGAGGGCAATGTGCTGTTGGTGGCACCTGCAGCCGAGTTTGCCGCGCAATCGGCAGA
CGCCCGGGTGAGTCAGGCGCTGGATGCGCACCTGCAGCCATTGCGTCGAGAGCTGCTGCCCATTCACCACGCCAAGGCCG
CCGATCTTGCGCAGTTGCTGCTGGCGGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGCTTGAGTGTCGATGAGCGCACC
AATACGTTGGTGGTGTACCTGCCCGCTGACCGCCTGGCCGAGATGCGCCAGCTGGTGGCGCAGTTGGATGTGCCGGTGCG
TCAGGTAGCGATCGAGGCGCGTATCGTCGAAGCCAACGTCGATTATGAGAAAAGCCTGGGGGTACGCTGGGGTGGGCCGC
TGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTG
GGTTTGTTGCGCGGTGACGTGTTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGCGAGATCATTTCGCA
GCCCAAGGTGGTCACGGCCGACAAGGAAACGGCGAGGATACTCAAGGGTACCGAGGTGCCTTACCAGGAAACGAGCCAAA
GCGGCGCTACCTCGGTATCGTTTCGCGAAGCCTCGCTGTCGCTGGAAGTAACGCCACAGATCACCCCGGACAACAAGGTG
ATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATCCGCAAGAACGA
GGTCAATGCCAAGGTTCGTGTGGCTGACGGCGAAACGATCGTGATCGGTGGCGTCTACTCGACTTCGCAAAACAATGTGG
TCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCC
GAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
59.174 |
100 |
0.614 |
| comQ | Acinetobacter baylyi ADP1 |
42.316 |
100 |
0.452 |
| pilQ | Acinetobacter baumannii strain A118 |
40.998 |
100 |
0.45 |
| pilQ | Acinetobacter baumannii D1279779 |
40.998 |
100 |
0.45 |
| pilQ | Legionella pneumophila strain ERS1305867 |
42.788 |
99.048 |
0.424 |
| pilQ | Legionella pneumophila strain Lp02 |
42.788 |
99.048 |
0.424 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.943 |
100 |
0.421 |
| pilQ | Vibrio cholerae strain A1552 |
41.943 |
100 |
0.421 |
| pilQ | Vibrio campbellii strain DS40M4 |
40.46 |
100 |
0.419 |
| pilQ | Neisseria gonorrhoeae strain FA1090 |
35.765 |
100 |
0.362 |
| pilQ | Neisseria meningitidis MC58 |
35.765 |
100 |
0.362 |
| pilQ | Neisseria meningitidis M1080 |
35.765 |
100 |
0.362 |