Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   INP70_RS00175 Genome accession   NZ_CP063420
Coordinates   38631..39746 (+) Length   371 a.a.
NCBI ID   WP_000654778.1    Uniprot ID   -
Organism   Vibrio cholerae strain VC_hf7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33631..44746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP70_RS00155 rsmB 34554..35834 (-) 1281 WP_001102803.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  INP70_RS00160 fmt 35890..36837 (-) 948 WP_000083538.1 methionyl-tRNA formyltransferase -
  INP70_RS00165 def 36855..37364 (-) 510 WP_000115010.1 peptide deformylase -
  INP70_RS00170 - 37504..38631 (+) 1128 WP_000113378.1 LysM peptidoglycan-binding domain-containing protein -
  INP70_RS00175 dprA 38631..39746 (+) 1116 WP_000654778.1 DNA-processing protein DprA Machinery gene
  INP70_RS00180 - 39749..40225 (+) 477 WP_000979770.1 DUF494 family protein -
  INP70_RS00185 - 40230..40796 (+) 567 WP_000087515.1 type I DNA topoisomerase -
  INP70_RS00190 tnpA 40969..41406 (+) 438 WP_000503164.1 IS200/IS605-like element IS1004 family transposase -
  INP70_RS00195 - 41491..42624 (-) 1134 WP_001265386.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  INP70_RS00200 purE 42628..43113 (-) 486 WP_000215774.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  INP70_RS00205 - 43280..43837 (+) 558 WP_002022527.1 L-threonylcarbamoyladenylate synthase -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39969.97 Da        Isoelectric Point: 7.1491

>NTDB_id=495506 INP70_RS00175 WP_000654778.1 38631..39746(+) (dprA) [Vibrio cholerae strain VC_hf7]
MKDQDLAAWLALCFTPKLGSKTISHLLATRLPAQLQSFTPKQWLASGLKPEQLVFLTTQAAKQAELCLQWRSAANNRYIV
TPHCPLYPRLLKEISSSPPILFIEGIWEAVQDPAVAIVGSRNASVDGRQIARQFATELAQSGLVVTSGLALGIDGYAHDG
ALQAQGQTVAVLGSGLAQVYPKQHQGLAERIMAQGALVSEFAPHTPPKADHFPRRNRIISGLSLGVVVVEAAEKSGSLIT
ARYAAEQGREVFVVPGSIFNAASQGSNQLIRQGACLVQSVQQIHQELKNALTWSLSEQVPYQATLFSAVQGDEELPFPEL
LANVGIEATPIDILASRTQIPVQDIMMQLLELELLGHVVAVPGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=495506 INP70_RS00175 WP_000654778.1 38631..39746(+) (dprA) [Vibrio cholerae strain VC_hf7]
ATGAAAGATCAGGATTTAGCGGCATGGTTGGCGCTCTGTTTTACTCCTAAACTAGGCAGCAAAACCATTTCTCACCTGCT
TGCGACCCGTTTGCCAGCCCAGTTGCAAAGTTTTACGCCTAAGCAATGGTTGGCCAGCGGGCTTAAGCCCGAACAACTGG
TGTTTTTAACTACTCAAGCGGCTAAACAAGCCGAGCTGTGTTTGCAATGGCGATCAGCAGCCAATAACCGCTATATCGTC
ACTCCTCATTGCCCGCTTTACCCTCGTTTATTGAAAGAGATTAGCTCATCGCCTCCCATCCTGTTTATCGAAGGAATATG
GGAAGCGGTGCAAGACCCTGCGGTGGCTATCGTCGGTAGCCGCAATGCCAGTGTTGATGGGCGGCAGATCGCTCGCCAGT
TTGCCACTGAGCTTGCGCAGTCGGGTTTAGTGGTCACCAGTGGTTTAGCGCTTGGTATAGATGGCTATGCGCACGATGGA
GCTTTGCAAGCACAAGGGCAAACCGTGGCAGTATTAGGCTCAGGGCTGGCGCAGGTTTACCCCAAACAGCATCAAGGATT
AGCGGAGCGAATCATGGCCCAAGGGGCCTTGGTTTCTGAGTTTGCCCCTCACACACCGCCTAAAGCCGATCACTTTCCGC
GCCGTAACCGAATTATCAGCGGCTTATCGTTGGGCGTTGTGGTGGTAGAAGCTGCGGAGAAAAGCGGCTCACTCATCACT
GCGCGCTACGCCGCTGAGCAAGGGCGTGAGGTCTTTGTGGTTCCCGGCTCGATTTTTAATGCCGCCAGCCAAGGTAGCAA
TCAATTGATTCGTCAAGGCGCTTGTTTGGTGCAAAGTGTGCAACAAATTCATCAAGAGCTCAAAAATGCGCTGACTTGGT
CACTCTCTGAACAAGTTCCTTATCAAGCAACACTTTTTTCTGCTGTACAGGGCGATGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGAATAGAAGCTACACCTATTGATATTCTCGCAAGCCGGACCCAGATACCGGTGCAAGATATCATGAT
GCAGCTCTTGGAGCTTGAGCTCCTTGGGCATGTGGTTGCAGTACCTGGTGGCTATATTAGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(319-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

98.113

100

0.981
  dprA Vibrio campbellii strain DS40M4

58.108

99.73

0.58
  dprA Legionella pneumophila strain ERS1305867

43.583

100

0.439
  dprA Glaesserella parasuis strain SC1401

43.351

100

0.439
  dprA Neisseria meningitidis strain C311

37.343

100

0.402
  dprA Neisseria meningitidis MC58

37.343

100

0.402
  dprA Neisseria gonorrhoeae strain FA1090

36.524

100

0.391
  dprA Acinetobacter baumannii D1279779

43.505

89.218

0.388
  dprA Acinetobacter baumannii strain A118

43.202

89.218

0.385
  dprA Neisseria gonorrhoeae MS11

35.696

100

0.38
  dprA Acinetobacter baylyi ADP1

42.042

89.757

0.377
  dprA Haemophilus influenzae Rd KW20

48.387

75.202

0.364